Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   LDM87_RS01550 Genome accession   NZ_AP024964
Coordinates   304435..305484 (-) Length   349 a.a.
NCBI ID   WP_223893346.1    Uniprot ID   -
Organism   Helicobacter pylori strain #6     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 299435..310484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM87_RS01530 (OHP006_02970) rpsL 300572..300979 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  LDM87_RS01535 (OHP006_02980) rpsG 300995..301462 (+) 468 WP_223893344.1 30S ribosomal protein S7 -
  LDM87_RS01540 (OHP006_02990) fusA 301474..303552 (+) 2079 WP_050835580.1 elongation factor G -
  LDM87_RS01545 (OHP006_03000) - 304082..304246 (+) 165 WP_000744175.1 hypothetical protein -
  LDM87_RS01550 (OHP006_03010) waaF 304435..305484 (-) 1050 WP_223893346.1 lipopolysaccharide heptosyltransferase II Regulator
  LDM87_RS01555 (OHP006_03020) hisS 305546..306874 (+) 1329 WP_223893348.1 histidine--tRNA ligase -
  LDM87_RS01560 (OHP006_03030) asd 306861..307901 (+) 1041 WP_223893350.1 aspartate-semialdehyde dehydrogenase -
  LDM87_RS01565 (OHP006_03040) - 308312..309547 (+) 1236 WP_223894185.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39625.52 Da        Isoelectric Point: 9.9538

>NTDB_id=76211 LDM87_RS01550 WP_223893346.1 304435..305484(-) (waaF) [Helicobacter pylori strain #6]
MSVNVPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMVAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLSFN
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNERNHLCMKSITPLEVLKAARTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=76211 LDM87_RS01550 WP_223893346.1 304435..305484(-) (waaF) [Helicobacter pylori strain #6]
ATGAGCGTAAATGTGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTAAGCCATGCGATAATGGTCGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTAGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTCAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATCATTCAAT
AACGCTTACAATCTGTGCGGAAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCACACAAACCCCTTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAGAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTTTTAAAAGCCGCTCGCACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.012

97.994

0.372

Multiple sequence alignment