Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   OXA88_RS03155 Genome accession   NZ_CP113436
Coordinates   676762..677469 (-) Length   235 a.a.
NCBI ID   WP_011945794.1    Uniprot ID   A0AAN5T2E4
Organism   Legionella pneumophila strain PATHC021     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 671762..682469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA88_RS03140 (OXA88_03140) - 674637..675149 (-) 513 WP_011945791.1 pilus assembly protein -
  OXA88_RS03145 (OXA88_03145) - 675146..676213 (-) 1068 WP_011945792.1 PilW family protein -
  OXA88_RS03150 (OXA88_03150) pilV 676210..676749 (-) 540 WP_011945793.1 type IV pilus modification protein PilV -
  OXA88_RS03155 (OXA88_03155) fimT 676762..677469 (-) 708 WP_011945794.1 GspH/FimT family pseudopilin Machinery gene
  OXA88_RS03160 (OXA88_03160) - 677692..678552 (-) 861 WP_011945795.1 polysaccharide deacetylase family protein -
  OXA88_RS03165 (OXA88_03165) - 678728..680077 (-) 1350 WP_072368662.1 lpg0634 family Dot/Icm T4SS effector -
  OXA88_RS03170 (OXA88_03170) - 680367..681848 (+) 1482 WP_011945797.1 ArnT family glycosyltransferase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 24849.51 Da        Isoelectric Point: 7.5609

>NTDB_id=762099 OXA88_RS03155 WP_011945794.1 676762..677469(-) (fimT) [Legionella pneumophila strain PATHC021]
MNKVITESQRFTLRNVANMLLCVDASVLPTQSNIAQKIQTKGIMYNDLCKDSFDTEVPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNSRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWSNGALNCP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=762099 OXA88_RS03155 WP_011945794.1 676762..677469(-) (fimT) [Legionella pneumophila strain PATHC021]
TTGAACAAAGTGATAACGGAATCACAAAGGTTCACTCTGCGCAACGTAGCTAATATGTTATTGTGTGTGGATGCTAGTGT
ATTGCCCACACAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATGACCTTTGTAAAGACAGCTTCG
ATACTGAGGTCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCCATTATCTTAACTCTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAGCCGTTTGACTTCAAACATCGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACAGCCTGTGGAGCCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACTTCAGTAAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACCGAGGCAATGCGTTTGCCCGCTCGGCAATGGTTTTGGCCACTG
GATTTGTCCAATCAGGAACAACACCCGGCCAGGCAGTCTGGAGTAATGGAGCTCTGAACTGCCCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(67-88)

Type II transport protein GspH (GspH)

(106-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

96.17

100

0.962