Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   OXA87_RS06815 Genome accession   NZ_CP113435
Coordinates   1502368..1502709 (+) Length   113 a.a.
NCBI ID   WP_027219497.1    Uniprot ID   A0A378K4T3
Organism   Legionella pneumophila strain PATHC025     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1497368..1507709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA87_RS06790 (OXA87_06790) acpP 1498196..1498444 (+) 249 WP_003631752.1 acyl carrier protein -
  OXA87_RS06795 (OXA87_06795) fabF 1498464..1499702 (+) 1239 WP_011946414.1 beta-ketoacyl-ACP synthase II -
  OXA87_RS06800 (OXA87_06800) mltG 1499703..1500701 (+) 999 WP_027219498.1 endolytic transglycosylase MltG -
  OXA87_RS06805 (OXA87_06805) tmk 1500701..1501339 (+) 639 WP_011946416.1 dTMP kinase -
  OXA87_RS06810 (OXA87_06810) - 1501336..1502241 (+) 906 WP_011946417.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  OXA87_RS06815 (OXA87_06815) pilZ 1502368..1502709 (+) 342 WP_027219497.1 PilZ domain-containing protein Machinery gene
  OXA87_RS06820 (OXA87_06820) - 1502765..1503553 (+) 789 WP_027219496.1 TatD family hydrolase -
  OXA87_RS06825 (OXA87_06825) - 1503665..1504765 (+) 1101 WP_027219495.1 anhydro-N-acetylmuramic acid kinase -
  OXA87_RS06830 (OXA87_06830) - 1504821..1506113 (+) 1293 WP_027219494.1 MFS transporter -
  OXA87_RS06835 (OXA87_06835) - 1506186..1506329 (+) 144 WP_013101444.1 hypothetical protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12535.57 Da        Isoelectric Point: 8.2421

>NTDB_id=762067 OXA87_RS06815 WP_027219497.1 1502368..1502709(+) (pilZ) [Legionella pneumophila strain PATHC025]
MTEKPQLINCSFPNEASLYMAYMPFVKGGGLFIRTQHVYSLGQSLELSIKLLNENEPYLVTGKIVWITPKGAQGNKPPGV
GIQFTGENSRYLCNKIETYLAGMLKSCQVTDTI

Nucleotide


Download         Length: 342 bp        

>NTDB_id=762067 OXA87_RS06815 WP_027219497.1 1502368..1502709(+) (pilZ) [Legionella pneumophila strain PATHC025]
ATGACCGAAAAACCACAGCTTATAAACTGCTCATTTCCCAATGAAGCATCTTTGTACATGGCTTACATGCCTTTTGTGAA
AGGTGGCGGTCTTTTTATAAGAACTCAACACGTTTATTCTCTAGGGCAGTCGCTTGAATTATCTATTAAATTGCTCAATG
AAAATGAACCATATTTGGTCACTGGTAAAATAGTCTGGATTACTCCTAAAGGTGCACAAGGTAATAAGCCGCCGGGAGTT
GGCATTCAATTTACCGGTGAAAACAGTCGTTATCTATGTAACAAGATAGAAACTTATTTGGCAGGAATGCTAAAATCATG
TCAGGTTACAGATACTATATAG

Domains

Predicted by InterproScan.

PilZ domain (PilZ)

(8-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378K4T3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

99.115

100

0.991
  pilZ Legionella pneumophila strain ERS1305867

99.115

100

0.991