Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   OXA89_RS10035 Genome accession   NZ_CP113434
Coordinates   2235337..2235651 (-) Length   104 a.a.
NCBI ID   WP_014844288.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC027     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2230337..2240651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA89_RS10010 (OXA89_10010) - 2230763..2231263 (-) 501 WP_014844283.1 hypothetical protein -
  OXA89_RS10015 (OXA89_10015) - 2231755..2232615 (+) 861 WP_014844284.1 polysaccharide deacetylase family protein -
  OXA89_RS10020 (OXA89_10020) - 2232732..2233928 (-) 1197 WP_265677740.1 murein transglycosylase A -
  OXA89_RS10025 (OXA89_10025) lpp1976 2234038..2234595 (-) 558 WP_014844286.1 hypothetical protein Machinery gene
  OXA89_RS10030 (OXA89_10030) lpp1977 2234592..2235398 (-) 807 WP_050598156.1 PilW family protein Machinery gene
  OXA89_RS10035 (OXA89_10035) lpp1978 2235337..2235651 (-) 315 WP_014844288.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  OXA89_RS10040 (OXA89_10040) hisC 2235811..2236920 (+) 1110 WP_014844289.1 histidinol-phosphate transaminase -
  OXA89_RS10045 (OXA89_10045) - 2236957..2237298 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  OXA89_RS10050 (OXA89_10050) secF 2237487..2238404 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  OXA89_RS10055 (OXA89_10055) secD 2238417..2240273 (-) 1857 WP_011214250.1 protein translocase subunit SecD -
  OXA89_RS10060 (OXA89_10060) yajC 2240295..2240630 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12233.33 Da        Isoelectric Point: 10.0591

>NTDB_id=762040 OXA89_RS10035 WP_014844288.1 2235337..2235651(-) (lpp1978) [Legionella pneumophila strain PATHC027]
MSKHKGFTLMEVLVSLMLMTTVVLTLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRTYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=762040 OXA89_RS10035 WP_014844288.1 2235337..2235651(-) (lpp1978) [Legionella pneumophila strain PATHC027]
ATGAGCAAGCATAAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGACCTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCACCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

98.077

100

0.981
  lpp1978 Legionella pneumophila str. Paris

96.154

100

0.962