Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OXA89_RS04905 Genome accession   NZ_CP113434
Coordinates   1072807..1073391 (+) Length   194 a.a.
NCBI ID   WP_013101268.1    Uniprot ID   A0A378K473
Organism   Legionella pneumophila strain PATHC027     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1067807..1078391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA89_RS04885 (OXA89_04885) - 1069157..1070164 (-) 1008 WP_013101264.1 hypothetical protein -
  OXA89_RS04890 (OXA89_04890) pilM 1070581..1071645 (+) 1065 WP_013101265.1 type IV pilus assembly protein PilM Machinery gene
  OXA89_RS04895 (OXA89_04895) pilN 1071649..1072197 (+) 549 WP_013101266.1 PilN domain-containing protein Machinery gene
  OXA89_RS04900 (OXA89_04900) pilO 1072211..1072810 (+) 600 WP_013101267.1 type 4a pilus biogenesis protein PilO Machinery gene
  OXA89_RS04905 (OXA89_04905) pilP 1072807..1073391 (+) 585 WP_013101268.1 pilus assembly protein PilP Machinery gene
  OXA89_RS04910 (OXA89_04910) pilQ 1073395..1075491 (+) 2097 WP_011946023.1 type IV pilus secretin PilQ Machinery gene
  OXA89_RS04915 (OXA89_04915) aroK 1075938..1076465 (+) 528 WP_010946667.1 shikimate kinase AroK -
  OXA89_RS04920 (OXA89_04920) aroB 1076452..1077561 (+) 1110 WP_027219628.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22026.56 Da        Isoelectric Point: 10.4471

>NTDB_id=762022 OXA89_RS04905 WP_013101268.1 1072807..1073391(+) (pilP) [Legionella pneumophila strain PATHC027]
MIIKNNQTLILGFFGNSLRVSLTAATFRKSLLTGLLVLLLSACSGDSSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRFP
ENDNRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRIV
LIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=762022 OXA89_RS04905 WP_013101268.1 1072807..1073391(+) (pilP) [Legionella pneumophila strain PATHC027]
ATGATAATTAAAAACAACCAGACTCTTATATTAGGCTTTTTCGGAAATTCTCTGCGTGTTTCACTCACAGCAGCGACTTT
CCGAAAAAGTCTATTGACGGGGTTATTGGTACTATTACTTAGTGCCTGCTCTGGTGATAGCAGTGACCTTGTTAAGTACA
TCAACGAAGTGAAATCAAGACCAGGAAGACCTATCGAGCCTATTCCCAAATTCGCCCCTTTGCCAATTTTTAGATTTCCA
GAAAACGACAATAGGCGAAATCCATTCAAACCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAAAAG
GCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCTGGG
CTCTGATTAAGCAACCTGACGGTCAGATTAGCCGTGTGAGGGTTGGAGATTACATGGGACAAAATTATGGACGTATTGTT
TTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAATTAA
TTTGGATACTGGCAAGCAGGAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(49-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378K473

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

94.33

100

0.943