Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   OXA89_RS03370 Genome accession   NZ_CP113434
Coordinates   716708..717415 (-) Length   235 a.a.
NCBI ID   WP_014841117.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC027     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 711708..722415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA89_RS03355 (OXA89_03355) - 714583..715095 (-) 513 WP_027219362.1 pilus assembly protein -
  OXA89_RS03360 (OXA89_03360) - 715092..716159 (-) 1068 WP_011945792.1 PilW family protein -
  OXA89_RS03365 (OXA89_03365) pilV 716156..716695 (-) 540 WP_011945793.1 type IV pilus modification protein PilV -
  OXA89_RS03370 (OXA89_03370) fimT 716708..717415 (-) 708 WP_014841117.1 GspH/FimT family pseudopilin Machinery gene
  OXA89_RS03375 (OXA89_03375) - 717636..718496 (-) 861 WP_011945795.1 polysaccharide deacetylase family protein -
  OXA89_RS03380 (OXA89_03380) - 718672..720021 (-) 1350 WP_072368662.1 lpg0634 family Dot/Icm T4SS effector -
  OXA89_RS03385 (OXA89_03385) - 720311..721792 (+) 1482 WP_027224035.1 ArnT family glycosyltransferase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 24791.47 Da        Isoelectric Point: 7.5607

>NTDB_id=762017 OXA89_RS03370 WP_014841117.1 716708..717415(-) (fimT) [Legionella pneumophila strain PATHC027]
MNKVITESQKFTLRNVANMLLCVDASVLPAQSNIAQKIQTKGIMYNDLCKDSFDTEVPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNSRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWSNGALNCP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=762017 OXA89_RS03370 WP_014841117.1 716708..717415(-) (fimT) [Legionella pneumophila strain PATHC027]
TTGAACAAAGTGATAACGGAATCACAAAAGTTCACTCTGCGCAACGTAGCTAATATGTTATTGTGTGTGGATGCTAGTGT
ATTGCCCGCACAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATGATCTTTGTAAAGACAGCTTCG
ATACTGAGGTCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCCATTATCTTAACTCTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAGCCGTTTGACTTCAAACATCGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACAGCCTGTGGAGCCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACTTCAGTAAATGATCCTGTTATAACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACCGAGGCAATGCGTTTGCCCGCTCGGCAATGGTTTTGGCCACTG
GATTTGTCCAATCAGGAACAACACCCGGCCAGGCAGTCTGGAGTAATGGAGCTCTGAACTGCCCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(67-88)

Type II transport protein GspH (GspH)

(106-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

97.021

100

0.97