Detailed information NTG0762000

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QLX61_RS06865
• Genome accession: NZ_CP125288
• Coordinates: 1472060..1473064 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SF416
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1467060..1478064

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QLX61_RS06835 (QLX61_06835)	fghA	1467152..1468003 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
QLX61_RS06840 (QLX61_06840)	ispF	1468074..1468547 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QLX61_RS06845 (QLX61_06845)	truD	1468544..1469611 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
QLX61_RS06850 (QLX61_06850)	surE	1469599..1470348 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QLX61_RS06855 (QLX61_06855)	-	1470381..1471016 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QLX61_RS06860 (QLX61_06860)	-	1471062..1471955 (+)	894	WP_058875672.1	peptidoglycan DD-metalloendopeptidase family protein	-
QLX61_RS06865 (QLX61_06865)	rpoS	1472060..1473064 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QLX61_RS06870 (QLX61_06870)	fdxA	1473491..1473814 (-)	324	WP_003092272.1	ferredoxin FdxA	-
QLX61_RS06875 (QLX61_06875)	mutS	1473881..1476448 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
QLX61_RS06880 (QLX61_06880)	-	1476574..1477581 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=762000 QLX61_RS06865 WP_003113871.1 1472060..1473064(+) (rpoS) [Pseudomonas aeruginosa strain SF416]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=762000 QLX61_RS06865 WP_003113871.1 1472060..1473064(+) (rpoS) [Pseudomonas aeruginosa strain SF416]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653