Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   QLX61_RS00135 Genome accession   NZ_CP125288
Coordinates   33204..34229 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain SF416     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 28204..39229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX61_RS00110 (QLX61_00110) - 28393..28710 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  QLX61_RS00115 (QLX61_00115) trkA 28859..30232 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  QLX61_RS00120 (QLX61_00120) rsmB 30259..31563 (-) 1305 WP_034037805.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QLX61_RS00125 (QLX61_00125) fmt 31560..32504 (-) 945 WP_009316076.1 methionyl-tRNA formyltransferase -
  QLX61_RS00130 (QLX61_00130) def 32559..33065 (-) 507 WP_003107059.1 peptide deformylase -
  QLX61_RS00135 (QLX61_00135) tsaP 33204..34229 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QLX61_RS00140 (QLX61_00140) dprA 34364..35452 (+) 1089 WP_003123764.1 DNA-processing protein DprA Machinery gene
  QLX61_RS00145 (QLX61_00145) - 35493..36050 (+) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  QLX61_RS00150 (QLX61_00150) - 36060..37037 (-) 978 WP_034037807.1 NADPH:quinone reductase -
  QLX61_RS00155 (QLX61_00155) hemF 37228..38145 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  QLX61_RS00160 (QLX61_00160) aroE 38203..39027 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=761981 QLX61_RS00135 WP_003097294.1 33204..34229(+) (tsaP) [Pseudomonas aeruginosa strain SF416]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=761981 QLX61_RS00135 WP_003097294.1 33204..34229(+) (tsaP) [Pseudomonas aeruginosa strain SF416]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATTGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393