Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   OXA92_RS03125 Genome accession   NZ_CP113433
Coordinates   668632..669339 (-) Length   235 a.a.
NCBI ID   WP_027266713.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC034     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 663632..674339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA92_RS03110 (OXA92_03110) - 666507..667019 (-) 513 WP_027266710.1 pilus assembly protein -
  OXA92_RS03115 (OXA92_03115) - 667016..668083 (-) 1068 WP_047661655.1 PilW family protein -
  OXA92_RS03120 (OXA92_03120) pilV 668080..668619 (-) 540 WP_047661657.1 type IV pilus modification protein PilV -
  OXA92_RS03125 (OXA92_03125) fimT 668632..669339 (-) 708 WP_027266713.1 GspH/FimT family pseudopilin Machinery gene
  OXA92_RS03130 (OXA92_03130) - 669561..670421 (-) 861 WP_011214853.1 polysaccharide deacetylase family protein -
  OXA92_RS03135 (OXA92_03135) - 670598..671947 (-) 1350 WP_077338884.1 lpg0634 family Dot/Icm T4SS effector -
  OXA92_RS03140 (OXA92_03140) - 672238..673719 (+) 1482 WP_047661659.1 ArnT family glycosyltransferase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 24923.55 Da        Isoelectric Point: 7.5607

>NTDB_id=761975 OXA92_RS03125 WP_027266713.1 668632..669339(-) (fimT) [Legionella pneumophila strain PATHC034]
MNKVITESQKFTPRNIANMLFCVDSSVLPAQSNIAQKIQTKGIMYNDLCKDSFDTEVPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGTPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWNNGALNCP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=761975 OXA92_RS03125 WP_027266713.1 668632..669339(-) (fimT) [Legionella pneumophila strain PATHC034]
TTGAACAAAGTGATAACGGAATCACAAAAATTCACTCCGCGCAACATAGCTAATATGTTATTTTGCGTTGATAGTAGTGT
ATTGCCCGCACAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATGATCTTTGTAAAGACAGCTTCG
ATACTGAGGTCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTG
TTTGCCATCATCTTAACTCTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTAGCACTTGATCGGGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACGGCCTGTGGAGCCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAACACCAACGCTT
TTAAAATCGCACCAGACTTCAGTGAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGATT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACAGAGGCAATGCGTTTGCCCGCTCGGCAATGGTTTTGGCCACTG
GATTTGTCCAATCCGGAACAACACCCGGCCAGGCAGTCTGGAATAATGGAGCTCTGAACTGCCCTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(106-208)

Prokaryotic N-terminal methylation motif (N_methyl)

(67-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

97.447

100

0.974