Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OU419_RS26110 Genome accession   NZ_CP113432
Coordinates   5634100..5636241 (-) Length   713 a.a.
NCBI ID   WP_254476271.1    Uniprot ID   -
Organism   Pseudomonas triclosanedens strain ZM23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5629100..5641241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU419_RS26095 (OU419_26095) - 5630736..5632409 (-) 1674 WP_254476276.1 AAA family ATPase -
  OU419_RS26100 (OU419_26100) aroB 5632416..5633522 (-) 1107 WP_254476273.1 3-dehydroquinate synthase -
  OU419_RS26105 (OU419_26105) aroK 5633573..5634064 (-) 492 WP_408004973.1 shikimate kinase AroK -
  OU419_RS26110 (OU419_26110) pilQ 5634100..5636241 (-) 2142 WP_254476271.1 type IV pilus secretin PilQ Machinery gene
  OU419_RS26115 (OU419_26115) pilP 5636295..5636819 (-) 525 WP_254476269.1 type 4a pilus biogenesis lipoprotein PilP -
  OU419_RS26120 (OU419_26120) pilO 5636816..5637469 (-) 654 WP_254476267.1 type 4a pilus biogenesis protein PilO -
  OU419_RS26125 (OU419_26125) pilN 5637466..5638059 (-) 594 WP_254476265.1 type 4a pilus biogenesis protein PilN -
  OU419_RS26130 (OU419_26130) pilM 5638059..5639123 (-) 1065 WP_254476263.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 713 a.a.        Molecular weight: 76120.34 Da        Isoelectric Point: 5.4052

>NTDB_id=761963 OU419_RS26110 WP_254476271.1 5634100..5636241(-) (pilQ) [Pseudomonas triclosanedens strain ZM23]
MNRRLSRLSISLLAAVFAPALLAANLQSVDVAALPGDRVELKLGFDEPVAAPRGYTIEQPARIALDLPGVQNKLGSKNRE
LGVGNARSLTVVEAKDRTRLIVNLTNLSPYTTRTEGSNLFIVVGGAPGASSTVASAAPVSAPIAKPAQPKPYIPAGKAIR
NIDFQRGAQGEGNVVIDLSDPTVSPDIQEQGGKIRLDFPRTQLPDNLRVRLDVKDFATPVQFVNASAASDKASISIEPTG
LYDYLVYQTDNRMTVSIKPLTADDAEKRKKDAFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGSITLRLQN
VPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELEAQKQISELAPLRRELIQVNYAKASDIAKLFQSVTGSGP
GAAAASAQSDSRGSITVDDRTNSIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEAAVDYSKSLGVRWGGAVTFGNW
ATWGKNGNIGVGGDNGTSCGPFGGGGCTLPTVSDVPTPSVDLGVQNSTSGLGIGFVSNNAILDLQLSAMEKGGNGEIVSQ
PKVVTSDKETAKILKGSEIPYQEASSSGATSVSFKEAALSLEVTPQITPDNRIIMEVKVNKDEPDYANALNGVPPIKKNE
VNAKVLVNDGETIVIGGVFSNTQTKATDKVPYLGDVPVLGRLFRRDSVTDSKNELLVFLTPRIMNNQAFAAGR

Nucleotide


Download         Length: 2142 bp        

>NTDB_id=761963 OU419_RS26110 WP_254476271.1 5634100..5636241(-) (pilQ) [Pseudomonas triclosanedens strain ZM23]
ATGAATAGAAGACTTTCCCGCCTGAGCATTTCCTTGCTCGCGGCTGTATTCGCACCGGCTCTTCTTGCCGCCAATCTGCA
AAGCGTCGATGTAGCGGCGCTGCCGGGTGATCGTGTCGAGTTGAAGCTGGGTTTCGATGAGCCGGTTGCGGCTCCGCGTG
GCTATACCATCGAGCAGCCCGCCCGTATTGCGCTGGACCTGCCAGGCGTACAGAACAAGCTGGGTAGCAAGAACCGCGAG
TTGGGCGTTGGTAATGCGCGCAGCCTGACGGTCGTGGAGGCCAAGGATCGGACCCGCCTGATCGTAAACCTGACCAATCT
TTCGCCCTATACCACGCGTACGGAAGGTTCGAACCTGTTCATCGTGGTGGGCGGAGCGCCGGGGGCGTCCAGCACCGTCG
CGTCGGCAGCACCCGTTTCCGCACCCATTGCCAAGCCGGCGCAGCCGAAGCCCTATATCCCGGCTGGCAAGGCGATTCGC
AATATCGACTTCCAACGCGGAGCGCAAGGTGAAGGCAATGTCGTGATCGACCTTTCCGATCCGACTGTTAGCCCGGATAT
CCAGGAGCAGGGTGGCAAGATTCGTCTGGACTTCCCGCGCACCCAGCTCCCGGACAACCTGCGCGTTCGCCTGGACGTGA
AGGACTTCGCCACTCCGGTGCAGTTCGTCAACGCTTCCGCCGCGAGCGACAAGGCCAGCATCAGTATCGAACCGACCGGT
CTGTATGACTATCTCGTCTACCAGACCGACAATCGCATGACCGTCAGCATCAAGCCGCTGACTGCGGACGATGCCGAGAA
GCGCAAGAAGGACGCGTTCGCCTATACCGGCGAAAAGCTGTCGCTGAACTTCCAGGACATCGATGTTCGTTCGGTGCTTC
AGCTCATTGCCGACTTCACCGATCTGAACCTGGTGGCCTCCGATACCGTTCAGGGCAGCATCACCCTGCGTCTGCAGAAT
GTGCCGTGGGACCAGGCGCTGGATCTGGTGCTGAAAACCAAGGGGCTGGACAAGCGCAAGGTCGGCAACGTCCTGCTGGT
CGCCCCGGCTGACGAGATCGCCGCGCGTGAGCGCCAGGAGCTCGAAGCGCAGAAGCAGATCTCCGAACTGGCACCGCTGC
GTCGTGAGCTTATCCAGGTCAACTACGCCAAGGCCTCCGATATCGCCAAGCTGTTCCAGTCGGTGACCGGTTCCGGCCCG
GGTGCGGCAGCCGCTTCTGCTCAGTCGGACAGCCGTGGCTCCATCACGGTAGATGACCGTACCAACAGTATCATTGCCTA
TCAGACCCAGGATCGCCTGGATGAGCTGCGCCGAATCGTGGCGCAGCTGGACATCCCGGTTCGCCAGGTCATGATCGAGG
CTCGCATCGTCGAGGCTGCCGTCGACTACAGCAAGAGCCTGGGGGTTCGCTGGGGTGGCGCCGTAACCTTCGGCAACTGG
GCTACCTGGGGCAAGAATGGCAACATCGGTGTGGGTGGCGATAACGGCACCAGCTGCGGCCCGTTTGGTGGCGGCGGTTG
TACGCTGCCAACCGTCAGCGATGTCCCGACGCCCTCGGTCGATCTTGGAGTACAAAACAGCACCTCTGGCCTTGGTATCG
GCTTCGTTTCCAACAATGCGATTCTCGACCTGCAATTGTCCGCTATGGAAAAAGGCGGCAACGGCGAGATCGTTTCACAG
CCGAAGGTCGTCACCTCGGACAAGGAAACCGCGAAGATCCTCAAGGGCTCGGAAATTCCGTACCAGGAAGCCAGCTCCAG
CGGCGCCACCTCGGTTTCCTTCAAGGAGGCGGCCCTGTCCCTGGAAGTCACTCCGCAGATCACTCCGGACAACCGGATCA
TCATGGAAGTGAAGGTCAACAAGGATGAGCCGGACTACGCCAACGCCCTGAACGGCGTACCGCCGATCAAGAAGAACGAA
GTGAATGCCAAGGTGCTGGTCAACGATGGCGAGACCATCGTGATTGGTGGTGTGTTCTCGAACACCCAGACCAAGGCGAC
CGACAAGGTTCCGTACCTGGGTGACGTACCGGTGCTGGGCCGCCTGTTCCGTCGTGATTCGGTAACTGACAGCAAGAACG
AGCTGCTGGTTTTCCTTACCCCCCGGATCATGAATAATCAGGCCTTTGCAGCCGGCCGTTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(40-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-449)

Bacterial type II and III secretion system protein (Secretin)

(548-704)

Secretin and TonB N terminus short domain (STN)

(303-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

80.694

100

0.815
  comQ Acinetobacter baylyi ADP1

41.621

100

0.425
  pilQ Acinetobacter baumannii D1279779

39.406

100

0.41
  pilQ Acinetobacter baumannii strain A118

39.406

100

0.41
  pilQ Legionella pneumophila strain ERS1305867

38.484

96.213

0.37
  pilQ Legionella pneumophila strain Lp02

38.338

96.213

0.369