Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   LDM85_RS07115 Genome accession   NZ_AP024963
Coordinates   1476693..1477928 (-) Length   411 a.a.
NCBI ID   WP_000734991.1    Uniprot ID   -
Organism   Helicobacter pylori strain #5     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1471693..1482928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM85_RS07075 (OHP005_14280) - 1471811..1473538 (-) 1728 WP_223887484.1 type IV secretory system conjugative DNA transfer family protein -
  LDM85_RS07080 (OHP005_14290) - 1473539..1474096 (-) 558 WP_223887485.1 hypothetical protein -
  LDM85_RS07085 (OHP005_14300) - 1474097..1474387 (-) 291 WP_223887486.1 hypothetical protein -
  LDM85_RS07090 (OHP005_14310) - 1474384..1474839 (-) 456 WP_180592752.1 mobilization protein -
  LDM85_RS07095 (OHP005_14320) - 1474889..1475776 (-) 888 WP_212862440.1 CpaF/VirB11 family protein -
  LDM85_RS07100 (OHP005_14330) - 1475766..1476077 (-) 312 WP_212862439.1 hypothetical protein -
  LDM85_RS07105 (OHP005_14340) - 1476074..1476337 (-) 264 WP_212862438.1 hypothetical protein -
  LDM85_RS07110 (OHP005_14350) - 1476330..1476623 (-) 294 WP_223887487.1 hypothetical protein -
  LDM85_RS07115 (OHP005_14360) comB10 1476693..1477928 (-) 1236 WP_000734991.1 DNA type IV secretion system protein ComB10 Machinery gene
  LDM85_RS07120 (OHP005_14370) - 1477925..1479466 (-) 1542 WP_223887488.1 TrbG/VirB9 family P-type conjugative transfer protein -
  LDM85_RS07125 (OHP005_14380) - 1479466..1480452 (-) 987 WP_223887489.1 VirB8/TrbF family protein -
  LDM85_RS07805 (OHP005_14390) - 1480454..1480585 (-) 132 WP_001185490.1 hypothetical protein -
  LDM85_RS07130 (OHP005_14400) - 1480585..1482519 (-) 1935 WP_223887939.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46442.51 Da        Isoelectric Point: 10.0008

>NTDB_id=76196 LDM85_RS07115 WP_000734991.1 1476693..1477928(-) (comB10) [Helicobacter pylori strain #5]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNVLVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=76196 LDM85_RS07115 WP_000734991.1 1476693..1477928(-) (comB10) [Helicobacter pylori strain #5]
ATGAAAAAACTTCTTTTACTCTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGTGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCTAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGTGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGGGCTGATGTCAAGGGTTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGCTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGGGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

54.483

70.56

0.384

Multiple sequence alignment