Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   OU819_RS25625 Genome accession   NZ_CP113428
Coordinates   4884040..4885389 (-) Length   449 a.a.
NCBI ID   WP_000225367.1    Uniprot ID   Q6HB95
Organism   Bacillus cereus strain NW6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4879040..4890389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU819_RS25605 (OU819_25605) secA 4879362..4881869 (-) 2508 WP_000579368.1 preprotein translocase subunit SecA -
  OU819_RS25610 (OU819_25610) hpf 4882146..4882688 (-) 543 WP_000671190.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  OU819_RS25615 (OU819_25615) cspC 4883012..4883209 (-) 198 WP_001990088.1 cold shock protein CspC -
  OU819_RS25620 (OU819_25620) comFC 4883336..4884040 (-) 705 WP_011181921.1 comF operon protein ComFC -
  OU819_RS25625 (OU819_25625) comFA 4884040..4885389 (-) 1350 WP_000225367.1 ATP-dependent helicase ComFA Machinery gene
  OU819_RS25630 (OU819_25630) - 4885517..4886839 (-) 1323 WP_011181922.1 NlpC/P60 family protein -
  OU819_RS25635 (OU819_25635) - 4887093..4887407 (-) 315 WP_000400857.1 winged helix-turn-helix transcriptional regulator -
  OU819_RS25640 (OU819_25640) - 4887581..4888423 (-) 843 WP_000844766.1 DegV family protein -
  OU819_RS25645 (OU819_25645) - 4888663..4889298 (+) 636 WP_000926685.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51253.98 Da        Isoelectric Point: 9.7782

>NTDB_id=761927 OU819_RS25625 WP_000225367.1 4884040..4885389(-) (comFA) [Bacillus cereus strain NW6]
MVAGKQLLLEELSSDLRRELSDLKKKGEVICVQGVIKKVSKYICQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIHERKGERELHSLQWKGSLSLGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVLELAPRLQEVFPSINVAALYGGSVDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KEKAARIYLTATPDEKWKRNFRRGKQKGIIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMYVNKKYPIFL
FVPHVRYIEEMSLLLKGLDHRIDGVHAEDPMRKEKVAAFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVVYFHYGKTESMVRAKRHIQSMNKSAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=761927 OU819_RS25625 WP_000225367.1 4884040..4885389(-) (comFA) [Bacillus cereus strain NW6]
ATGGTTGCTGGAAAGCAGTTACTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGATTTGAAAAAGAAGGG
AGAGGTCATATGTGTACAAGGCGTAATAAAGAAGGTTTCTAAATATATATGTCAGCGCTGCGGGAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCAGTAAAGTATGTACGTATTGCCGGAAGTGTATAACGATGGGGAGAGTTAGT
GAATGTGCTGTACTTGTTCGCGGGATTCATGAAAGAAAAGGAGAAAGGGAATTACATTCGTTACAGTGGAAAGGGAGTTT
GTCTCTTGGTCAGGAGCTAGCGGCGCAAGGTGTTATAGAAGCTATTAAGCAAAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAAGCACTTCAAAAAGGAGAAAGAGTGTGTATCGCAACG
CCAAGGACGGACGTTGTACTGGAATTAGCACCGAGATTACAAGAAGTGTTTCCAAGTATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGATCGTGAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCATTTC
ATGTAATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTGCAGCAAGCGATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGCAATTTCAGAAGGGGGAAACAAAA
AGGTATCATTGTCTCTGGAAGATATCATCGTCATCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGTGTGTTACTACAATGGTTAAAAATGTACGTAAACAAAAAATACCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATGAGCCTGTTATTGAAAGGGTTGGATCATAGAATCGATGGCGTACATGC
AGAAGATCCGATGAGAAAAGAAAAAGTGGCAGCGTTTAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGGGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGGGCTGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCGTATGGTGAGGTTGTTTATTTTCATTACGGTAAGACAGAGTC
GATGGTACGTGCGAAAAGACATATTCAAAGTATGAACAAAAGTGCGAAAGAACAAGGATTAATTGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(312-408)

Type III restriction enzyme, res subunit (ResIII)

(108-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6HB95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.153

93.096

0.486
  comFA Latilactobacillus sakei subsp. sakei 23K

40.75

89.087

0.363