Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   OU819_RS09750 Genome accession   NZ_CP113428
Coordinates   1897096..1897383 (+) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus cereus strain NW6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1892096..1902383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU819_RS09730 (OU819_09730) - 1893271..1893468 (+) 198 WP_001048092.1 DUF4083 domain-containing protein -
  OU819_RS09735 (OU819_09735) - 1893500..1893961 (+) 462 WP_267999132.1 NUDIX hydrolase -
  OU819_RS09740 (OU819_09740) nadE 1894009..1894827 (-) 819 WP_000174880.1 ammonia-dependent NAD(+) synthetase -
  OU819_RS09745 (OU819_09745) - 1895099..1896979 (+) 1881 WP_267999133.1 FtsX-like permease family protein -
  OU819_RS09750 (OU819_09750) abrB 1897096..1897383 (+) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  OU819_RS09755 (OU819_09755) - 1897658..1898608 (+) 951 WP_070172629.1 serine protease -
  OU819_RS09760 (OU819_09760) - 1898649..1898957 (-) 309 WP_001259894.1 ArsR/SmtB family transcription factor -
  OU819_RS09765 (OU819_09765) - 1899065..1900000 (+) 936 WP_088015830.1 aldo/keto reductase -
  OU819_RS09770 (OU819_09770) - 1900049..1901224 (+) 1176 WP_078438368.1 MFS transporter -
  OU819_RS09775 (OU819_09775) - 1901413..1901637 (-) 225 WP_000162601.1 hypothetical protein -
  OU819_RS09780 (OU819_09780) - 1901722..1902069 (-) 348 WP_000426311.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=761905 OU819_RS09750 WP_000648331.1 1897096..1897383(+) (abrB) [Bacillus cereus strain NW6]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=761905 OU819_RS09750 WP_000648331.1 1897096..1897383(+) (abrB) [Bacillus cereus strain NW6]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516