Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   OU819_RS06440 Genome accession   NZ_CP113428
Coordinates   1247826..1248149 (-) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus cereus strain NW6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1242826..1253149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU819_RS06410 (OU819_06410) - 1243187..1243969 (-) 783 WP_267999085.1 IS3 family transposase -
  OU819_RS06415 (OU819_06415) - 1244060..1244380 (-) 321 WP_001074673.1 helix-turn-helix domain-containing protein -
  OU819_RS06420 (OU819_06420) sipW 1244636..1245205 (+) 570 WP_000767813.1 signal peptidase I SipW -
  OU819_RS06425 (OU819_06425) - 1245268..1245855 (+) 588 WP_000172838.1 CalY family protein -
  OU819_RS06430 (OU819_06430) - 1246019..1246882 (+) 864 WP_139368440.1 DUF4047 domain-containing protein -
  OU819_RS06435 (OU819_06435) calY 1247156..1247749 (+) 594 WP_000053731.1 biofilm matrix protein CalY -
  OU819_RS06440 (OU819_06440) sinR 1247826..1248149 (-) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  OU819_RS06445 (OU819_06445) - 1248229..1248363 (-) 135 WP_000276214.1 anti-repressor SinI family protein -
  OU819_RS06450 (OU819_06450) inhA1 1248707..1251094 (+) 2388 WP_001035926.1 M6 family metalloprotease immune inhibitor InhA1 -
  OU819_RS06455 (OU819_06455) - 1251266..1252633 (+) 1368 WP_088015509.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=761902 OU819_RS06440 WP_000578878.1 1247826..1248149(-) (sinR) [Bacillus cereus strain NW6]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=761902 OU819_RS06440 WP_000578878.1 1247826..1248149(-) (sinR) [Bacillus cereus strain NW6]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692