Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   LDM85_RS06105 Genome accession   NZ_AP024963
Coordinates   1284841..1285890 (+) Length   349 a.a.
NCBI ID   WP_223887423.1    Uniprot ID   -
Organism   Helicobacter pylori strain #5     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1279841..1290890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM85_RS06085 (OHP005_12350) - 1279913..1280656 (+) 744 WP_223887419.1 carbonic anhydrase -
  LDM85_RS06090 (OHP005_12360) - 1280886..1281992 (-) 1107 WP_223887420.1 DUF874 family protein -
  LDM85_RS06095 (OHP005_12370) asd 1282424..1283464 (-) 1041 WP_223887421.1 aspartate-semialdehyde dehydrogenase -
  LDM85_RS06100 (OHP005_12380) hisS 1283451..1284779 (-) 1329 WP_223887422.1 histidine--tRNA ligase -
  LDM85_RS06105 (OHP005_12390) waaF 1284841..1285890 (+) 1050 WP_223887423.1 lipopolysaccharide heptosyltransferase II Regulator
  LDM85_RS06110 (OHP005_12400) - 1286088..1286414 (-) 327 WP_000744162.1 hypothetical protein -
  LDM85_RS06115 (OHP005_12410) fusA 1286960..1289038 (-) 2079 WP_121070016.1 elongation factor G -
  LDM85_RS06120 (OHP005_12420) rpsG 1289050..1289517 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  LDM85_RS06125 (OHP005_12430) rpsL 1289533..1289940 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39552.52 Da        Isoelectric Point: 9.7665

>NTDB_id=76189 LDM85_RS06105 WP_223887423.1 1284841..1285890(+) (waaF) [Helicobacter pylori strain #5]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAIFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASHYAEVSAILLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIECIAILDLFITNDSGPMHVAASAKTPLIALFGPTDEKETRPYKAQRTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=76189 LDM85_RS06105 WP_223887423.1 1284841..1285890(+) (waaF) [Helicobacter pylori strain #5]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAACTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCATTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTCTTTCGTTCTTTGTTCCTAAGCCATGCGGTAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTCATTATGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGTGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCAAAAACCCCCTTAATCGCCCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAGAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361

Multiple sequence alignment