Detailed information NTG0761852

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: OU987_RS17720
• Genome accession: NZ_CP113418
• Coordinates: 3581769..3582914 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain WH1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3576769..3587914

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OU987_RS17700 (OU987_17700)	-	3577666..3578094 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
OU987_RS17705 (OU987_17705)	-	3578248..3578760 (+)	513	Protein_3427	bacteriocin biosynthesis protein AlbG	-
OU987_RS17710 (OU987_17710)	-	3578767..3580143 (-)	1377	WP_032875890.1	YncE family protein	-
OU987_RS17715 (OU987_17715)	-	3580183..3581538 (-)	1356	WP_032875887.1	YncE family protein	-
OU987_RS17720 (OU987_17720)	rapF	3581769..3582914 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
OU987_RS17725 (OU987_17725)	-	3582898..3583017 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
OU987_RS17730 (OU987_17730)	speB	3583140..3584012 (-)	873	WP_032875884.1	agmatinase	-
OU987_RS17735 (OU987_17735)	speE	3584071..3584901 (-)	831	WP_003151052.1	spermidine synthase	-
OU987_RS17740 (OU987_17740)	-	3585101..3587173 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
OU987_RS17745 (OU987_17745)	-	3587198..3587631 (-)	434	Protein_3435	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=761852 OU987_RS17720 WP_074534220.1 3581769..3582914(+) (rapF) [Bacillus amyloliquefaciens strain WH1]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=761852 OU987_RS17720 WP_074534220.1 3581769..3582914(+) (rapF) [Bacillus amyloliquefaciens strain WH1]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541