Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LDM85_RS04330 Genome accession   NZ_AP024963
Coordinates   907641..909161 (-) Length   506 a.a.
NCBI ID   WP_212894118.1    Uniprot ID   -
Organism   Helicobacter pylori strain #5     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 902641..914161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM85_RS04320 (OHP005_08890) - 904252..905520 (-) 1269 WP_223887233.1 restriction endonuclease subunit S -
  LDM85_RS04325 (OHP005_08900) - 905556..907616 (-) 2061 WP_223887234.1 heavy metal translocating P-type ATPase -
  LDM85_RS04330 (OHP005_08910) comM 907641..909161 (-) 1521 WP_212894118.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LDM85_RS04335 (OHP005_08920) def 909164..909691 (-) 528 WP_223887235.1 peptide deformylase -
  LDM85_RS04340 (OHP005_08930) clpP 909696..910283 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  LDM85_RS04345 (OHP005_08940) tig 910306..911661 (-) 1356 WP_223887236.1 trigger factor -
  LDM85_RS04350 (OHP005_08950) - 911774..912610 (-) 837 WP_223887237.1 outer membrane protein -
  LDM85_RS04355 (OHP005_08960) hpaA 912639..913421 (-) 783 WP_223887238.1 flagellar sheath lipoprotein HpaA -
  LDM85_RS04360 (OHP005_08970) moaC 913540..914016 (-) 477 WP_223887239.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57237.22 Da        Isoelectric Point: 8.2333

>NTDB_id=76181 LDM85_RS04330 WP_212894118.1 907641..909161(-) (comM) [Helicobacter pylori strain #5]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQWVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACEDIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=76181 LDM85_RS04330 WP_212894118.1 907641..909161(-) (comM) [Helicobacter pylori strain #5]
ATGATTAACACGATATTTTGTGCAACCATGCAAAGGGGGGTGGCAGAGATCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAGCTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ACAACGATTTCACTTTTCCGCCCTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGTAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATCAAACACCCCCATGCTAAAG
TCATTGCACCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAATTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATCAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
TGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGTATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCATTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAACCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAAATTGAATACGAAAC
CTCTTTTTTATTTGTTGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATGGGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.431

100

0.974
  comM Acinetobacter baylyi ADP1

36.204

100

0.366

Multiple sequence alignment