Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QMA14_RS04485 Genome accession   NZ_CP125087
Coordinates   901081..901683 (+) Length   200 a.a.
NCBI ID   WP_005696838.1    Uniprot ID   A0ABP2NW55
Organism   Haemophilus parainfluenzae strain EL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 896081..906683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS04465 (QMA14_04465) - 896773..898011 (+) 1239 WP_049375693.1 HAAAP family serine/threonine permease -
  QMA14_RS04470 (QMA14_04470) - 898047..899417 (+) 1371 WP_284174425.1 L-serine ammonia-lyase -
  QMA14_RS04475 (QMA14_04475) - 899463..900554 (-) 1092 WP_049375695.1 metallophosphoesterase -
  QMA14_RS04480 (QMA14_04480) - 900690..901019 (+) 330 WP_049375696.1 YbaB/EbfC family nucleoid-associated protein -
  QMA14_RS04485 (QMA14_04485) recR 901081..901683 (+) 603 WP_005696838.1 recombination mediator RecR Machinery gene
  QMA14_RS04490 (QMA14_04490) - 901688..903631 (+) 1944 WP_102703620.1 DNA topoisomerase III -
  QMA14_RS04495 (QMA14_04495) secG 903748..904095 (+) 348 WP_005696834.1 preprotein translocase subunit SecG -
  QMA14_RS04505 (QMA14_04505) - 904331..905752 (+) 1422 WP_102703621.1 sucrose-specific PTS transporter subunit IIBC -
  QMA14_RS04510 (QMA14_04510) - 905842..906309 (-) 468 WP_005696832.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22056.16 Da        Isoelectric Point: 6.3981

>NTDB_id=761806 QMA14_RS04485 WP_005696838.1 901081..901683(+) (recR) [Haemophilus parainfluenzae strain EL1]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEETCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEI
CHQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=761806 QMA14_RS04485 WP_005696838.1 901081..901683(+) (recR) [Haemophilus parainfluenzae strain EL1]
ATGCAAAGCAGTCCACTTTTAGAACATCTTATTGAAAACCTTCGTTGCTTGCCGGGTGTTGGTCCGAAATCAGCACAGCG
CATGGCTTATCATCTTTTACAGCGCAATCGTAGCGGTGGGATGAATTTAGCTCGTGCATTAACGGAAGCGATGTCTAAAA
TTGGGCATTGTTCGCAGTGTCGTGATTTTACCGAAGAGGAAACGTGCAATATTTGTAACAATCCTCGTCGTCAAAATTCA
GGTTTACTTTGTGTGGTGGAAATGCCGGCGGATATTCAAGCCATTGAGCAAACCGGCCAATTTTCTGGACGTTATTTTGT
CTTAATGGGGCATTTATCACCTTTAGATGGTATTGGCCCAAAAGAAATTGGATTAGATTTATTGCAAAAACGTCTGGTCG
AAGAATCTTTCCATGAAGTGATTTTAGCGACCAATCCAACGGTGGAAGGCGATGCCACAGCTAATTATATTGCTGAAATT
TGCCATCAACATAATATTAAAGTAAGCCGTATTGCTCACGGGATCCCTGTCGGTGGGGAATTAGAAACTGTGGACGGCAC
AACCTTAACTCACTCTTTCTTAGGTCGTCGTCAGATCGACTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

99.5

0.435
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.719

99.5

0.435