Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QMA14_RS03845 Genome accession   NZ_CP125087
Coordinates   779509..781374 (+) Length   621 a.a.
NCBI ID   WP_284174390.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain EL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 774509..786374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS03815 (QMA14_03815) yihI 775279..775836 (+) 558 WP_284174387.1 Der GTPase-activating protein YihI -
  QMA14_RS03820 (QMA14_03820) - 775842..776285 (+) 444 WP_005696984.1 DUF2489 domain-containing protein -
  QMA14_RS03825 (QMA14_03825) hemN 776285..777652 (+) 1368 WP_284174388.1 oxygen-independent coproporphyrinogen III oxidase -
  QMA14_RS03830 (QMA14_03830) lysA 777705..778955 (-) 1251 WP_284174389.1 diaminopimelate decarboxylase -
  QMA14_RS03835 (QMA14_03835) - 778983..779108 (-) 126 WP_005697346.1 lipoprotein -
  QMA14_RS03840 (QMA14_03840) cyaY 779204..779509 (+) 306 WP_070868500.1 iron donor protein CyaY -
  QMA14_RS03845 (QMA14_03845) recQ 779509..781374 (+) 1866 WP_284174390.1 DNA helicase RecQ Machinery gene
  QMA14_RS03850 (QMA14_03850) - 781416..782957 (-) 1542 WP_102703556.1 YjjI family glycine radical enzyme -
  QMA14_RS03855 (QMA14_03855) - 783148..783813 (+) 666 WP_005696975.1 YitT family protein -
  QMA14_RS03860 (QMA14_03860) - 783763..784794 (-) 1032 WP_102703557.1 glycosyltransferase family 9 protein -
  QMA14_RS03865 (QMA14_03865) - 784791..785777 (-) 987 WP_232620856.1 O-antigen ligase -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 70345.89 Da        Isoelectric Point: 8.2215

>NTDB_id=761804 QMA14_RS03845 WP_284174390.1 779509..781374(+) (recQ) [Haemophilus parainfluenzae strain EL1]
MTELAEHAPQKTDLKMTALNILRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPGLTLVISPLI
SLMKDQVDQLQANGIEADFLNSSQTSEQQQKVENKLISGQLKLLYVSPEKVMTNSFFQLISYAQISFIAIDEAHCISQWG
HDFRPEYTQLGGLKAAFPNAPIMALTATADYATRQDILTHLKLDHPHKYIGSFDRPNIRYTLEEKFKPMEQLTRFVLAQK
GKSGIVYCNSRSKVERIAETLRNKGVSAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPR
SIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKFLLEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQT
PCQNCDICLDPPKKYDGLIDAQKVMSTIYRVGQCFGLQYVIAVLRGMHNQKIVERQHDKLSVYGIGKDKSKEHWQSVIRQ
LIHLGFIQQVIGEFNSATLQLTESARPVLKGEVPLELAMPRISSINKIVHTSHKNTVANYDKDLFARLRFLRKQLADKEN
IPPYIVFNDATLQEMAQYMPTSNIEMLQINGVGAIKLERFGQPFMALIREHKAILEKAEKG

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=761804 QMA14_RS03845 WP_284174390.1 779509..781374(+) (recQ) [Haemophilus parainfluenzae strain EL1]
ATGACCGAACTCGCGGAACATGCCCCGCAAAAAACAGACTTAAAAATGACCGCACTTAATATATTGCGGTCTGTTTTTGG
TTACCAATCTTTCCGCAAAGGGCAGGAAGAAGTGATTCATGCTGCATTAAGCGGTCAAGATGCCTTAGTGGTGATGGCCA
CAGGAAATGGCAAATCCTTGTGTTATCAAATTCCAGCACTTTGTTTTCCTGGTCTCACATTAGTGATTTCGCCTTTGATT
TCTTTAATGAAAGATCAGGTAGATCAACTTCAAGCAAACGGCATTGAAGCCGATTTTCTAAACTCTAGTCAGACGTCAGA
ACAACAACAGAAAGTTGAAAACAAGCTGATTTCAGGACAATTAAAATTATTATATGTTTCGCCTGAAAAAGTGATGACAA
ACAGCTTTTTTCAGCTGATTTCTTATGCTCAAATTTCCTTTATCGCCATTGATGAAGCCCATTGTATTTCACAGTGGGGG
CATGATTTCCGTCCTGAATATACTCAGCTTGGCGGCTTAAAAGCGGCGTTTCCAAATGCGCCGATTATGGCATTAACGGC
TACGGCGGATTACGCGACAAGACAGGATATTCTCACTCATCTTAAATTAGACCATCCTCATAAATACATTGGCAGTTTTG
ACCGCCCAAATATTCGTTATACGTTAGAAGAAAAATTTAAGCCAATGGAGCAGCTTACGCGTTTTGTGTTGGCTCAGAAA
GGTAAAAGTGGCATTGTGTATTGTAATAGCCGTTCGAAAGTAGAACGTATAGCTGAAACTTTGCGAAATAAAGGCGTGTC
GGCTGCGGCATATCATGCGGGAATGGAAACTGCACTGCGTGAACGCGTCCAGCAAGATTTTCAACGAGATAATGTTCAAG
TTGTGGTTGCAACAATTGCATTTGGCATGGGCATTAATAAATCCAATGTGCGTTTTGTCGCCCATTTTGATTTGCCGAGA
AGCATTGAATCATATTACCAAGAAACCGGTCGTGCGGGGCGAGATGATTTACCTGCAGAAGCGGTGCTTTTCTACGAACC
GGCTGATTATGCTTGGTTGCAGAAATTTTTGCTTGAAAAACCAGAGACGCCACAACGTCAAATTGAGCAACATAAATTGG
AAGCCATTGGCGAATTTGCAGAAAGCCAAACTTGTCGCCGTTTGGTGTTACTCAATTATTTTGGTGAACATCGTCAAACA
CCTTGTCAAAACTGCGATATTTGTCTTGATCCGCCCAAGAAATATGATGGTTTAATTGATGCGCAAAAAGTGATGTCGAC
GATTTATCGTGTGGGGCAGTGTTTCGGCTTGCAATATGTGATTGCAGTATTGCGGGGAATGCATAATCAGAAAATTGTGG
AACGCCAGCATGATAAGTTAAGTGTTTATGGCATTGGCAAAGATAAAAGCAAAGAACATTGGCAATCTGTCATTCGTCAA
CTTATTCATCTTGGGTTTATTCAGCAAGTGATCGGTGAATTTAATAGTGCCACACTTCAGCTCACAGAAAGTGCACGTCC
TGTTTTAAAAGGCGAAGTGCCGCTTGAATTGGCAATGCCGCGCATTTCATCTATTAATAAAATTGTGCATACATCCCATA
AAAATACAGTGGCAAATTACGATAAAGATCTGTTTGCTCGCTTGCGTTTCCTACGGAAGCAGCTCGCGGATAAGGAAAAT
ATCCCACCTTATATTGTTTTTAATGATGCGACGTTGCAGGAAATGGCGCAATATATGCCAACAAGCAATATTGAAATGTT
ACAAATTAATGGGGTGGGCGCGATCAAATTAGAGCGCTTTGGGCAGCCGTTTATGGCATTGATTCGAGAGCACAAAGCGA
TTTTAGAAAAAGCAGAAAAAGGATAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(542-608)

RecQ zinc-binding (RecQ_Zn_bind)

(349-409)

DEAD/DEAH box helicase (DEAD)

(34-190)

RQC domain (RQC)

(411-521)

Helicase conserved C-terminal domain (Helicase_C)

(230-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.363

96.135

0.378