Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   QMA14_RS03660 Genome accession   NZ_CP125087
Coordinates   739507..740022 (+) Length   171 a.a.
NCBI ID   WP_005694713.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain EL1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 734507..745022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS03645 (QMA14_03645) - 734528..735832 (+) 1305 WP_102704372.1 MFS transporter -
  QMA14_RS03650 (QMA14_03650) - 735957..738575 (-) 2619 WP_102704363.1 penicillin-binding protein 1A -
  QMA14_RS03655 (QMA14_03655) comA 738675..739523 (+) 849 WP_065242935.1 pilus assembly protein PilM Machinery gene
  QMA14_RS03660 (QMA14_03660) comB 739507..740022 (+) 516 WP_005694713.1 hypothetical protein Machinery gene
  QMA14_RS03665 (QMA14_03665) comC 740019..740561 (+) 543 WP_005694712.1 hypothetical protein Machinery gene
  QMA14_RS03670 (QMA14_03670) - 740561..740944 (+) 384 WP_005697438.1 pilus assembly protein PilP -
  QMA14_RS03675 (QMA14_03675) comE 740988..742328 (+) 1341 WP_065242968.1 type IV pilus secretin PilQ Machinery gene
  QMA14_RS03680 (QMA14_03680) - 742348..743037 (+) 690 WP_065242967.1 ComF family protein -
  QMA14_RS03685 (QMA14_03685) nfuA 743153..743737 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 20345.50 Da        Isoelectric Point: 6.1353

>NTDB_id=761797 QMA14_RS03660 WP_005694713.1 739507..740022(+) (comB) [Haemophilus parainfluenzae strain EL1]
MMLSLNLLPWRLEQHQKAFKRFMWQGLIWLACSVLIVFGLSHLNEQQVYVLNQTKEKLAQITNQVHKKHIQVQQLQSNLK
EMNELTEMDTEYVYRMLNLLSELPLQQGELDVFTLNAKQVALSGMTENQQEFEAIHQFLKHHFTEVNLTKFQPVQQQLFF
QFDIQLLESEQ

Nucleotide


Download         Length: 516 bp        

>NTDB_id=761797 QMA14_RS03660 WP_005694713.1 739507..740022(+) (comB) [Haemophilus parainfluenzae strain EL1]
ATGATGTTAAGCCTTAATTTATTGCCTTGGCGCTTAGAACAACATCAAAAGGCTTTTAAGCGCTTTATGTGGCAAGGTTT
AATTTGGCTAGCTTGCTCAGTGTTGATTGTCTTTGGCTTGAGTCATCTTAATGAACAACAAGTGTATGTGCTAAATCAGA
CAAAAGAAAAACTCGCACAAATCACCAATCAAGTCCATAAGAAACATATTCAAGTTCAGCAACTACAAAGTAACCTGAAA
GAAATGAATGAGCTGACAGAAATGGATACAGAATATGTGTATCGGATGCTTAACTTATTAAGTGAGTTACCATTACAACA
AGGTGAGTTAGATGTATTTACGCTCAATGCTAAGCAAGTTGCCCTTTCTGGCATGACGGAAAATCAACAAGAATTTGAAG
CGATACATCAATTTCTTAAACATCATTTTACAGAGGTTAATTTGACCAAGTTTCAACCAGTGCAACAACAGTTATTCTTT
CAATTTGATATTCAGTTATTGGAGTCTGAGCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

41.718

95.322

0.398
  comB Haemophilus influenzae Rd KW20

41.104

95.322

0.392