Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   G6L90_RS10540 Genome accession   NZ_CP124967
Coordinates   2118459..2119424 (+) Length   321 a.a.
NCBI ID   WP_004429900.1    Uniprot ID   A0A822V141
Organism   Agrobacterium tumefaciens strain O54/95     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2113459..2124424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L90_RS10515 (G6L90_10515) - 2113586..2114530 (+) 945 WP_174069831.1 tripartite tricarboxylate transporter substrate binding protein -
  G6L90_RS10520 (G6L90_10520) - 2114527..2115021 (+) 495 WP_060723679.1 tripartite tricarboxylate transporter TctB family protein -
  G6L90_RS10525 (G6L90_10525) - 2115129..2116646 (+) 1518 WP_004429907.1 tripartite tricarboxylate transporter permease -
  G6L90_RS10530 (G6L90_10530) - 2116775..2117035 (+) 261 WP_060723731.1 hypothetical protein -
  G6L90_RS10535 (G6L90_10535) - 2117371..2118309 (+) 939 WP_099085886.1 siderophore ABC transporter substrate-binding protein -
  G6L90_RS10540 (G6L90_10540) ceuB 2118459..2119424 (+) 966 WP_004429900.1 ABC transporter permease Machinery gene
  G6L90_RS10545 (G6L90_10545) - 2119417..2120385 (+) 969 WP_020808783.1 iron chelate uptake ABC transporter family permease subunit -
  G6L90_RS10550 (G6L90_10550) - 2120382..2121140 (+) 759 WP_004429896.1 ABC transporter ATP-binding protein -
  G6L90_RS10555 (G6L90_10555) dps 2121263..2121751 (+) 489 WP_004429894.1 DNA starvation/stationary phase protection protein Dps -
  G6L90_RS10560 (G6L90_10560) - 2121789..2122058 (+) 270 WP_174014737.1 hypothetical protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 34278.31 Da        Isoelectric Point: 11.0429

>NTDB_id=761763 G6L90_RS10540 WP_004429900.1 2118459..2119424(+) (ceuB) [Agrobacterium tumefaciens strain O54/95]
MKSLSLILALLLALTLAIVSLFVGVSNVSLATLFAPDTSTDALRVLLVSRIPRTLALILAGSSMAIAGLIMQMLVRNRFV
EPSTAGTTESAGLGLLTVTLIAPDTPIFGKMLVAAVFALAGTALFLRILRQVPLRDVLLVPLIGIMLGGVISAVTTFFAY
RFDLLQSLGAWMTGDFSGVLRGRYELLWVGFLFAIAAYLAADRFTVAGMGRDFTTNLGLNYRRVMALGLTIVSLVSAVVV
VTVGMIPFLGLIVPNVVSLMIGDNMRRSVPWVATLGAVFVLSCDIIGRTVRAPYEIPIGTVVGVIGSVLFLYLLLRKRHH
A

Nucleotide


Download         Length: 966 bp        

>NTDB_id=761763 G6L90_RS10540 WP_004429900.1 2118459..2119424(+) (ceuB) [Agrobacterium tumefaciens strain O54/95]
GTGAAATCCCTGTCTCTCATCCTTGCCCTTCTTCTGGCGCTGACACTCGCAATCGTCAGCCTGTTCGTCGGTGTGAGCAA
CGTTTCTCTGGCCACGCTTTTTGCACCTGACACAAGCACGGATGCACTGCGCGTGCTGCTCGTCAGCCGCATTCCGCGCA
CGCTGGCGCTGATACTGGCCGGAAGCTCGATGGCGATTGCAGGTCTCATCATGCAGATGCTGGTGCGCAACCGTTTCGTG
GAGCCTTCGACGGCGGGCACCACCGAATCCGCCGGTCTCGGCCTGCTCACCGTCACCCTGATTGCACCCGACACGCCGAT
CTTCGGCAAGATGCTGGTGGCCGCCGTTTTCGCGCTCGCCGGCACCGCGCTGTTCCTGCGTATCCTGAGACAAGTGCCAT
TGCGGGACGTGCTGCTGGTGCCGCTGATCGGCATCATGCTGGGCGGCGTCATCTCCGCCGTCACCACCTTCTTCGCTTAT
CGTTTCGATCTCTTGCAATCGCTCGGCGCATGGATGACGGGGGATTTTTCCGGCGTGCTGCGCGGCCGCTATGAATTGCT
CTGGGTCGGTTTCCTCTTCGCCATTGCCGCCTATCTCGCCGCGGACCGGTTTACGGTGGCTGGCATGGGGCGCGACTTCA
CCACCAATCTCGGCCTCAACTATCGCCGGGTGATGGCGCTCGGCCTCACCATCGTCTCGCTGGTCAGCGCCGTTGTCGTC
GTCACCGTCGGCATGATCCCCTTTCTCGGGCTGATCGTGCCGAACGTCGTCAGCCTGATGATCGGCGACAATATGCGCCG
CTCGGTTCCATGGGTGGCGACGCTTGGCGCAGTCTTCGTTCTCTCCTGCGACATCATCGGCCGAACCGTGCGCGCGCCTT
ATGAAATACCGATCGGAACCGTGGTCGGCGTCATCGGCAGCGTGCTGTTCCTTTATCTCCTGCTGCGGAAACGCCACCAT
GCGTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822V141

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

43.574

99.377

0.433