Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   G6L90_RS05630 Genome accession   NZ_CP124967
Coordinates   1137783..1140704 (+) Length   973 a.a.
NCBI ID   WP_099085416.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain O54/95     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1132783..1145704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L90_RS05610 (G6L90_05610) - 1134678..1135307 (+) 630 WP_003502754.1 MarC family protein -
  G6L90_RS05615 (G6L90_05615) - 1135434..1136582 (+) 1149 WP_129565184.1 HPP family protein -
  G6L90_RS05620 (G6L90_05620) - 1136637..1136900 (-) 264 WP_223564850.1 hypothetical protein -
  G6L90_RS05625 (G6L90_05625) ssb 1136934..1137476 (-) 543 WP_035212518.1 single-stranded DNA-binding protein Machinery gene
  G6L90_RS05630 (G6L90_05630) uvrA 1137783..1140704 (+) 2922 WP_099085416.1 excinuclease ABC subunit UvrA Machinery gene
  G6L90_RS05635 (G6L90_05635) - 1140761..1141561 (+) 801 WP_060724997.1 DUF72 domain-containing protein -
  G6L90_RS05640 (G6L90_05640) dusA 1141568..1142578 (-) 1011 WP_111784471.1 tRNA dihydrouridine(20/20a) synthase DusA -
  G6L90_RS05645 (G6L90_05645) - 1142717..1143406 (+) 690 WP_107675552.1 fumarylacetoacetate hydrolase family protein -
  G6L90_RS05650 (G6L90_05650) - 1143443..1143976 (+) 534 WP_087744026.1 gamma carbonic anhydrase family protein -
  G6L90_RS05655 (G6L90_05655) zur 1144013..1144426 (-) 414 WP_003502775.1 zinc uptake transcriptional repressor Zur -
  G6L90_RS05660 (G6L90_05660) znuB 1144423..1145241 (-) 819 WP_060725818.1 zinc ABC transporter permease subunit ZnuB -

Sequence

Protein


Download         Length: 973 a.a.        Molecular weight: 107005.93 Da        Isoelectric Point: 6.5667

>NTDB_id=761754 G6L90_RS05630 WP_099085416.1 1137783..1140704(+) (uvrA) [Agrobacterium tumefaciens strain O54/95]
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDQID
GLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRG
RKGEYKKELADLMKKGFQRVKVDGQFYEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFA
DKPLPPEETAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPSCDGLGSQQKVDENLIVPEPA
RTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWSDLSKDAQHAILQGTEEKIEFNYQDGARSYKTVKNFEGIVPN
LERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKINKLHIGEVTEMSIRTARDWFEVLPENLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKHLRDIG
NTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGSPQEVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGA
RGNNLKNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVT
FKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEP
TTGLHFHDVNKLLEMLHALVEQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVERSYTGHFLKEL
LERRPAGKREAAE

Nucleotide


Download         Length: 2922 bp        

>NTDB_id=761754 G6L90_RS05630 WP_099085416.1 1137783..1140704(+) (uvrA) [Agrobacterium tumefaciens strain O54/95]
ATGAGTGAACTGAAGACGATTTCCATCCGTGGCGCCCGCGAGCATAACCTCAAGGGCATCGATCTGGATTTGCCGCGCAA
CAAGCTGATCGTCATGACCGGCCTTTCCGGCTCGGGCAAGTCTTCGCTTGCCTTCGATACGATCTATGCCGAAGGCCAGC
GCCGTTATGTCGAAAGCCTCTCGGCCTATGCGCGCCAGTTCCTGGAGATGATGCAGAAGCCGGATGTCGACCAGATCGAC
GGCCTGTCGCCGGCAATCTCCATCGAGCAAAAGACCACCTCGCGCAACCCGCGCTCCACGGTCGGCACGGTCACCGAGAT
CTACGATTATATGCGCCTTCTCTTCGCGCGTGTCGGTGTCCCCTATTCGCCAGCCACCGGCCTGCCGATCGAAAGCCAGA
CTGTCAGCCAGATGGTCGATCGCATTCTCGCTTTCGAGGAAGGTACGCGTCTTTATATTCTTGCGCCGATAGTCCGCGGC
CGCAAAGGCGAATATAAGAAGGAACTCGCCGATCTGATGAAGAAGGGCTTCCAGCGCGTCAAGGTGGATGGCCAGTTCTA
CGAAATCGCCGACGTTCCTGCTCTCGACAAGAAATACAAGCACGACATCGACGTGGTGGTCGATCGCGCCGTCGTGCGCC
CGGACATGGCAGCACGCCTTGCCGACAGTCTCGAGACCTGCCTCAAGCTCGCCGACGGGCTGGCGATTGCGGAATTTGCT
GACAAGCCTTTGCCACCGGAAGAAACCGCCGCTGGCGGCTCCGCCAACAAGTCGCTCAACGAGACCCATGAGCGGGTGCT
GTTTTCGGAAAAATTCGCCTGCCCCGTTTCCGGCTTCACCATTCCGGAAATCGAGCCCCGGCTGTTCTCCTTCAACAACC
CCTTCGGCGCCTGCCCGAGCTGCGATGGCCTTGGCTCGCAGCAGAAGGTGGATGAAAACCTGATCGTTCCGGAACCGGCA
CGAACGCTGCGGGACGGCGCGATAGCTCCCTGGGCCAAATCCTCCTCGCCCTATTATAACCAGACGCTGGAAGCGCTCGG
CAAGGCCTTCGGCTTCAAGCTCTCCAGCAAATGGTCCGATCTTTCGAAGGACGCACAGCACGCCATCCTGCAGGGCACCG
AGGAAAAGATCGAATTCAACTACCAGGACGGCGCCCGCTCCTACAAGACGGTGAAGAATTTCGAAGGCATCGTGCCCAAT
CTGGAGCGTCGCTGGAAAGAGACCGACAGCGCCTGGGCGCGTGAGGAAATCGAACGCTACATGTCGGCGGCCCCCTGCCC
GGCCTGCGCCGGTTATCGCCTGAAGCCGGAAGCGCTCGCCGTCAAGATCAACAAGCTGCATATTGGTGAAGTCACCGAAA
TGTCGATCCGCACGGCGCGCGACTGGTTTGAAGTGCTGCCGGAAAACCTCAACGCCAAGCAGAACGAAATCGCAGTCCGC
ATCCTCAAGGAAATCCGCGAGCGCCTGCGCTTCCTCAATGATGTCGGACTGGATTATCTCAGCCTGTCGCGCAATTCCGG
CACGCTTTCCGGCGGTGAAAGCCAGCGTATCCGTCTGGCCTCGCAGATCGGCTCGGGCCTGACAGGCGTTCTCTATGTTC
TCGACGAGCCGTCAATCGGCCTGCACCAGCGCGACAACGCCCGCCTGCTCGATACGCTGAAACATCTGCGCGATATCGGC
AATACTGTCATCGTGGTCGAACATGACGAAGACGCCATTCTGACGGCCGATTATGTCGTCGATATCGGCCCGGCCGCCGG
CATTCATGGCGGTCAGGTGATTGCCGAAGGATCACCGCAGGAGGTGATGGCCAATCCGAAATCGCTGACCGGCAAATATC
TTTCGGGCGAACTCGGCGTCGCCGTGCCGGCTGAGCGTCGCAAGCCCAAGAAAGGCCGCGAAATCAAGGTGTTTGGCGCG
CGCGGCAACAACCTGAAGAATGTCACGGCAGCTGTGCCGCTCGGTGTTTTCACTGCCGTAACCGGCGTTTCGGGCGGCGG
CAAATCCACATTCCTGATCGAGACGCTTTATAAATCGGCGGCGCGCCGGGTGATGGGTGCGCGCGAAATCCCGGCCGAGC
ACGACCGCATCGATGGTTTCGAATTCATCGACAAGGTGATCGATATCGACCAGTCGCCGATTGGCCGCACGCCGCGTTCC
AACCCGGCCACCTATACCGGTGCGTTCACGCCGATCCGCGACTGGTTCGCCGGTCTGCCGGAAGCCAAGGCGCGCGGTTA
CGCGCCGGGCCGTTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGGCCTGCCAGGGCGATGGCGTCATCAAGATCGAGA
TGCACTTCCTGCCTGACGTTTACGTCACCTGCGATGTCTGCCACGGCAAGCGTTATAATCGCGAGACGCTTGACGTCACC
TTCAAGGGCAAATCCATCGCCGACGTGCTGGATATGACGGTGGAGGAAGGCGTGGAATTCTTCGCCGCCGTGCCGGCTGT
GCGCGACAAGCTGCAATCGCTTTTCGATGTCGGCCTCGGTTATATCAAGGTCGGCCAGCAGGCCAATACGCTCTCCGGCG
GCGAAGCGCAGCGCGTCAAGCTCGCCAAGGAACTGTCCAAGCGCTCCACCGGTCGCACGCTCTACATTCTCGACGAGCCG
ACGACCGGCCTGCATTTCCACGATGTCAACAAGCTGCTCGAAATGCTGCATGCGCTTGTGGAACAGGGTAATTCCGTCGT
GGTGATCGAGCACAATCTCGAAGTCATCAAGACGGCGGACTGGATCATCGATATCGGGCCTGAAGGCGGCACGGGCGGCG
GCGAAGTGGTGGCGACCGGTACGCCGGAAGACATCGTGAAAGTCGAGCGTTCCTATACCGGTCACTTCCTGAAGGAGCTT
CTGGAGCGCCGGCCGGCCGGAAAACGGGAGGCTGCGGAGTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(311-419)

UvrA interaction domain (UvrA_inter)

(133-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.247

98.561

0.564
  uvrA Streptococcus pneumoniae TIGR4

57.247

98.561

0.564
  uvrA Streptococcus pneumoniae D39

57.247

98.561

0.564