Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   G6L90_RS01650 Genome accession   NZ_CP124967
Coordinates   348177..350009 (-) Length   610 a.a.
NCBI ID   WP_003503145.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain O54/95     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 343177..355009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L90_RS01625 (G6L90_01625) - 343868..344107 (+) 240 WP_174069500.1 DUF4170 domain-containing protein -
  G6L90_RS01630 (G6L90_01630) waaA 344323..345645 (+) 1323 WP_020010543.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  G6L90_RS01635 (G6L90_01635) - 345639..346376 (+) 738 WP_129564586.1 HAD family hydrolase -
  G6L90_RS01640 (G6L90_01640) lpxK 346525..347571 (+) 1047 WP_129564585.1 tetraacyldisaccharide 4'-kinase -
  G6L90_RS01645 (G6L90_01645) - 347804..348025 (-) 222 WP_003503147.1 DUF2093 domain-containing protein -
  G6L90_RS01650 (G6L90_01650) hexB 348177..350009 (-) 1833 WP_003503145.1 DNA mismatch repair endonuclease MutL Machinery gene
  G6L90_RS01655 (G6L90_01655) - 350419..352038 (+) 1620 WP_162709101.1 response regulator -
  G6L90_RS01660 (G6L90_01660) - 352125..353477 (+) 1353 WP_003503140.1 EAL domain-containing protein -
  G6L90_RS01665 (G6L90_01665) - 353662..354549 (-) 888 WP_060726057.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 65586.45 Da        Isoelectric Point: 6.0819

>NTDB_id=761741 G6L90_RS01650 WP_003503145.1 348177..350009(-) (hexB) [Agrobacterium tumefaciens strain O54/95]
MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSPADLELAVRRHCTSKI
SDTLDDIRTLGFRGEALPSIGSVAKLTITSRQQGAEQGSVISVTGGKVSDVRPAASNAGTIVEVRDLFFATPARLKFLKT
ERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLTGFAGVPTF
NRGNSAHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSITLDPAFVDVNVHPAKSDVRFRDPGLIRGLIVGAI
RQALTRDGDRAATTGASQMMNAFRPGYSPSGLRPSPSMAAPAPWSAATSPSRPLAVSGDMQFAEAVQSRFSDITMPTARA
EPREIYETAASPSPEPVLYPLGAARAQLHENYIIAQTENGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDL
PEEDCDRLMDHSAGFDALGLVIERFGPGAVAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGS
VRSGRRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=761741 G6L90_RS01650 WP_003503145.1 348177..350009(-) (hexB) [Agrobacterium tumefaciens strain O54/95]
ATGGCCATCAAGCAGCTTTCAGAAACCCTTATCAACCAGATCGCCGCCGGCGAGGTCATCGAGAGACCCTCCAGCGCCAC
GAAGGAACTGGTGGAAAACGCCATCGACGCTGGCGCGACCAGGATCGAGATCGCCACGGCGGGCGGCGGCAAGGGGCTGG
TGCGGATTACCGATAACGGTTCCGGCATGTCACCTGCCGATCTGGAGCTTGCGGTCAGGCGTCACTGCACCTCGAAAATT
TCCGATACGCTGGATGATATCCGCACGCTCGGGTTTCGTGGCGAGGCGCTGCCCTCCATCGGCTCGGTCGCCAAGCTGAC
GATTACCAGCCGCCAACAGGGCGCTGAACAGGGTTCGGTGATTTCCGTTACCGGCGGCAAGGTTTCCGATGTCCGGCCCG
CCGCCTCGAATGCCGGTACAATCGTCGAGGTGCGCGACCTGTTTTTCGCCACCCCCGCGCGGCTGAAATTCCTGAAGACG
GAACGGGCCGAGGCGGCCGCGATTACCGAAGTCGTCAAGCGTATGGCGATCGCCTTCCCGCATATCCGTTTCGTGCTATC
AGGCACCGACCGTTCGACGCTCGAAATTCCTTCGACCGGCGACGATCATCTGGCCCGCATGGCGCAGATTCTGGGCGCCG
AGTTCAAGGACAACGCCATCGAGATCGATGCCGGGCGCGAGGATGTGACGCTGACCGGTTTTGCCGGTGTTCCGACCTTC
AATCGCGGCAACTCGGCGCATCAATATGTCTTCGTCAACGGCCGCCCGGTGCAGGACAAGCTGCTTTTATCCGCCATTCG
CGGCGCTTATGCCGAAACCGTGCCGCATGGGCGATATCCGGTCGCGGTGCTGTCCATCACGCTTGACCCCGCCTTTGTGG
ATGTGAACGTGCATCCGGCGAAATCCGACGTGCGTTTTCGTGATCCCGGCCTCATTCGCGGGCTGATCGTCGGCGCGATC
CGCCAGGCGCTGACGCGCGACGGCGACAGGGCCGCGACGACGGGCGCGAGCCAGATGATGAATGCGTTCCGCCCCGGCTA
TAGCCCGTCCGGCCTCAGGCCCTCGCCTTCCATGGCAGCCCCCGCGCCGTGGTCCGCCGCCACCTCACCGTCGCGGCCGC
TTGCGGTTTCCGGGGACATGCAATTTGCCGAGGCGGTGCAATCGCGCTTTTCCGACATCACCATGCCGACGGCGCGGGCC
GAGCCTCGGGAGATTTACGAGACCGCCGCGAGCCCCTCGCCGGAACCTGTGCTTTACCCGCTCGGCGCTGCGCGGGCGCA
GCTGCACGAGAACTACATCATCGCCCAGACGGAAAACGGCCTTGTCATCGTCGACCAGCATGCCGCGCATGAGCGGCTGG
TGTTTGAGGAAATGCGCAATGCACTGCATTCCCGGCGTCCGCCGTCGCAGGTGCTGCTCATCCCTGAAATCATCGATTTG
CCGGAAGAGGATTGCGACCGGCTGATGGATCACTCCGCCGGGTTCGATGCGCTGGGGCTCGTCATCGAACGTTTCGGGCC
GGGCGCGGTCGCCGTCCGGGAAACGCCTGCCATGCTGGGTGAGGTCAATGTGCAGGGGCTGGTGCGTCAGCTTGCCGACG
AGATCGCCGAATGGGACGCCGCCTCCACGCTTGCCAACAAGCTGGAATATGTCGCGGCCACCATGGCCTGCCACGGCTCG
GTGCGTTCCGGCCGGCGTATGCGGCCGGAAGAGATGAACGCGCTTCTACGGCAGATGGAAAACACGCCGGGTTCCGGTCA
ATGCAATCATGGCCGACCGACCTATATCGAACTGAAACTTTCCGATATAGAACGGCTCTTCGGCCGCAGCTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(24-122)

MutL C terminal dimerisation domain (MutL_C)

(420-566)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

34.056

100

0.361