Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   G6L16_RS12805 Genome accession   NZ_CP124963
Coordinates   2621917..2623725 (+) Length   602 a.a.
NCBI ID   WP_174001165.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain AF1/95     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2616917..2628725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L16_RS12805 (G6L16_012805) recQ 2621917..2623725 (+) 1809 WP_174001165.1 DNA helicase RecQ Machinery gene
  G6L16_RS12810 (G6L16_012810) - 2623780..2625012 (-) 1233 WP_065661530.1 ROK family transcriptional regulator -
  G6L16_RS12815 (G6L16_012815) - 2625279..2626301 (+) 1023 WP_174001166.1 sugar ABC transporter substrate-binding protein -
  G6L16_RS12820 (G6L16_012820) - 2626524..2627606 (+) 1083 WP_038489298.1 ABC transporter permease -
  G6L16_RS12825 (G6L16_012825) - 2627606..2628388 (+) 783 WP_097172669.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 66959.71 Da        Isoelectric Point: 6.5091

>NTDB_id=761733 G6L16_RS12805 WP_174001165.1 2621917..2623725(+) (recQ) [Agrobacterium tumefaciens strain AF1/95]
MITDPLQILKTVYGYDTFRGQQAEIIRHVMAGNNAFVLMPTGGGKSLCYQIPALARKGMGLVVSPLIALMVDQVAALRQA
GVRAEALNSDLSPEERRALWQDMRAGKVDILYAAPETLLKPDVLDALQPISLSLIAIDEAHCLSQWGHDFRPPYRQLDTL
IERFPDTPRMALTATADEPTRAEILGHLGINGSDAFIAGFDRPNIRYAIMEKDNPRTQLKRFLTGREDESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKAAREANQTHFQHGEAVIMVATVAFGMGIDKPDVRFVVHIDLPSSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAGDQRKNMERRKLDALLGLAETAGCRRRVLLSYFGDHCEPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGMEDERISSFGHDRITTYGIGKEHDNRTWRAILRQMVALRLIEVDLAG
HGGLSISEEGRRFLREKPSLMLRIPTAPRSARQQTTRKSTAIVLPEADRSLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELAAARPASVGEMAQIPGVGDTKLERYGPAFLAAIMEHAASE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=761733 G6L16_RS12805 WP_174001165.1 2621917..2623725(+) (recQ) [Agrobacterium tumefaciens strain AF1/95]
GTGATCACCGACCCCTTGCAGATTCTCAAGACCGTCTATGGCTACGATACGTTTCGTGGACAGCAGGCGGAAATCATCCG
TCATGTGATGGCAGGCAACAATGCTTTTGTGTTGATGCCAACAGGGGGCGGGAAGTCGCTTTGTTACCAGATTCCGGCGC
TCGCCCGTAAGGGAATGGGGCTGGTTGTTTCGCCCTTGATCGCGCTGATGGTCGATCAGGTCGCCGCCCTGCGTCAGGCA
GGTGTGCGGGCAGAAGCTCTCAACTCCGATCTTTCCCCAGAAGAGCGGCGGGCACTCTGGCAGGATATGCGGGCTGGCAA
GGTCGATATTCTCTATGCCGCGCCCGAGACCCTTCTCAAGCCGGATGTTCTGGATGCGCTTCAACCTATCAGCCTGTCGC
TGATCGCGATTGATGAAGCTCATTGCCTGTCGCAGTGGGGGCACGATTTCCGTCCCCCTTACCGCCAGCTAGACACGTTG
ATCGAGCGCTTTCCGGATACGCCACGCATGGCGCTGACGGCGACTGCGGACGAGCCAACCCGCGCCGAAATTCTGGGTCA
TCTGGGGATCAACGGAAGCGACGCCTTCATAGCCGGATTCGACCGGCCAAATATCCGCTATGCGATCATGGAAAAGGATA
ATCCACGTACGCAGCTGAAGCGCTTCCTGACGGGTCGCGAGGACGAAAGCGGCATCGTCTATTGCCTTTCCAAGCGCAAG
GTCGACGAGACGGCGGCCTGGCTGCGTGAGGAGGGGCGCGATGCGCTGCCCTATCACGCCGGCATGGACAAGGCCGCCCG
GGAGGCCAACCAGACCCACTTCCAGCATGGTGAAGCGGTCATCATGGTTGCAACCGTGGCTTTCGGCATGGGCATCGACA
AACCGGATGTTCGCTTTGTCGTGCATATCGATCTGCCCAGCAGCATCGAAGCCTATTATCAGGAAACCGGCCGTGCCGGC
CGTGATGGTCTGCCGTCCGACGTGCTTATGCTTTACGGTTATGAAGACATCGCATTGCGCAACCGCTTCATCGAAGAGTC
GGATGCGGGCGACCAGCGCAAAAACATGGAGCGCCGGAAGCTCGATGCGTTGCTTGGCCTTGCGGAAACAGCCGGTTGCC
GTCGGCGGGTGCTTTTGTCTTATTTCGGCGACCATTGCGAGCCCTGCGGCAATTGCGACACCTGTGCGGAACCGCCGGAC
CTGTTTGATGGTGCCATTGCCGCACAGAAGTTGCTGTCCTGCATTTACCGCACCGGAGAACGTTTCGGCCAAGCCTATGT
CATCCGCGTATTACTGGGCATGGAAGATGAACGGATATCGAGCTTCGGTCACGATCGGATCACGACCTACGGCATCGGCA
AAGAGCACGACAATCGCACCTGGCGGGCCATCCTGCGCCAGATGGTTGCGTTACGCCTGATCGAGGTTGATCTGGCCGGT
CACGGGGGATTGTCCATTTCCGAAGAAGGGAGGCGGTTCCTGCGCGAAAAGCCGTCCCTGATGTTGAGGATACCGACCGC
TCCCCGTTCGGCGCGACAACAGACGACTCGCAAGTCCACCGCCATTGTTTTACCGGAGGCCGATCGCAGTCTCTTTGAGG
CGCTGCGTGCGAAGCGCATGGAAATTGCCCGCGCACAGAACGTTCCGCCCTATGTGATTTTTCACGACAAGACACTTATT
GAGCTTGCGGCAGCAAGACCGGCCTCTGTGGGGGAAATGGCGCAGATACCGGGAGTGGGAGACACAAAGCTGGAACGATA
CGGCCCTGCTTTTCTGGCGGCGATCATGGAACATGCAGCCAGCGAGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(220-322)

HRDC domain (HRDC)

(530-595)

RQC domain (RQC)

(398-510)

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

DEAD/DEAH box helicase (DEAD)

(22-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.645

100

0.377