Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H7R22_RS15475 Genome accession   NZ_AP022003
Coordinates   3188201..3188830 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain WP3-W18-ESBL-08     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3183201..3193830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R22_RS15460 (WP3W18E08_30080) helD 3183443..3185497 (-) 2055 WP_001550921.1 DNA helicase IV -
  H7R22_RS15465 (WP3W18E08_30090) yccF 3185620..3186066 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H7R22_RS15470 (WP3W18E08_30100) yccS 3186076..3188238 (+) 2163 WP_001550920.1 YccS family putative transporter -
  H7R22_RS15475 (WP3W18E08_30110) sxy/tfoX 3188201..3188830 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H7R22_RS15480 (WP3W18E08_30120) sulA 3189049..3189558 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  H7R22_RS15485 (WP3W18E08_30130) ompA 3189915..3190967 (+) 1053 WP_000750418.1 porin OmpA -
  H7R22_RS15490 (WP3W18E08_30140) matP 3191042..3191494 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  H7R22_RS15495 (WP3W18E08_30150) ycbZ 3191680..3193440 (+) 1761 WP_000156479.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=76173 H7R22_RS15475 WP_000839153.1 3188201..3188830(-) (sxy/tfoX) [Escherichia coli strain WP3-W18-ESBL-08]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=76173 H7R22_RS15475 WP_000839153.1 3188201..3188830(-) (sxy/tfoX) [Escherichia coli strain WP3-W18-ESBL-08]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment