Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   G6L16_RS10615 Genome accession   NZ_CP124963
Coordinates   2121366..2122331 (+) Length   321 a.a.
NCBI ID   WP_174002258.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain AF1/95     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2116366..2127331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L16_RS10590 (G6L16_010590) - 2116577..2117521 (+) 945 WP_003514032.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  G6L16_RS10595 (G6L16_010595) - 2117518..2118012 (+) 495 WP_174002256.1 tripartite tricarboxylate transporter TctB family protein -
  G6L16_RS10600 (G6L16_010600) - 2118120..2119637 (+) 1518 WP_003514036.1 tripartite tricarboxylate transporter permease -
  G6L16_RS10605 (G6L16_010605) - 2119767..2120027 (+) 261 WP_003514037.1 hypothetical protein -
  G6L16_RS10610 (G6L16_010610) - 2120228..2121166 (+) 939 WP_174002257.1 siderophore ABC transporter substrate-binding protein -
  G6L16_RS10615 (G6L16_010615) ceuB 2121366..2122331 (+) 966 WP_174002258.1 ABC transporter permease Machinery gene
  G6L16_RS10620 (G6L16_010620) - 2122324..2123292 (+) 969 WP_174002259.1 iron chelate uptake ABC transporter family permease subunit -
  G6L16_RS10625 (G6L16_010625) - 2123289..2124047 (+) 759 WP_097100826.1 ABC transporter ATP-binding protein -
  G6L16_RS10630 (G6L16_010630) dps 2124173..2124661 (+) 489 WP_003514046.1 DNA starvation/stationary phase protection protein Dps -
  G6L16_RS10635 (G6L16_010635) - 2124783..2124977 (+) 195 WP_097100827.1 hypothetical protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 34205.17 Da        Isoelectric Point: 11.0429

>NTDB_id=761725 G6L16_RS10615 WP_174002258.1 2121366..2122331(+) (ceuB) [Agrobacterium tumefaciens strain AF1/95]
MKSLPLISALLLALALAITSLFVGVSNVSLVTLFAQDTSADALRVLLISRIPRTLALILAGSSMAIAGLIMQMLVRNRFV
EPSTAGTTESAGLGLLTVTLLAPETPIFGKMLVAAAFALAGTALFLRILRQVPLRDVLLVPLIGIMLGGVISAVTTFFAY
RFDLLQSLGAWMTGDFSGVLRGRYELLWIGFVFAIAAYLAADRFTVAGMGRDFTTNLGLNYRRVMALGLTIVSLVSAVVV
VTVGMIPFLGLIVPNVVSLMIGDNMRRSVPWVATLGAVFVLACDIIGRTVRAPYEVPIGTVVGVIGSALFLYLLLRKRHH
A

Nucleotide


Download         Length: 966 bp        

>NTDB_id=761725 G6L16_RS10615 WP_174002258.1 2121366..2122331(+) (ceuB) [Agrobacterium tumefaciens strain AF1/95]
GTGAAATCCCTGCCCCTCATCTCAGCCCTTCTTCTGGCTCTGGCACTCGCCATCACCAGCCTGTTCGTCGGCGTCAGCAA
TGTGTCGCTCGTCACGCTTTTTGCGCAGGACACCAGCGCCGATGCCCTCCGCGTGCTGCTTATAAGCCGCATTCCACGCA
CGCTGGCGCTGATACTGGCGGGAAGCTCGATGGCGATTGCCGGTCTCATCATGCAGATGCTGGTGCGCAACCGCTTCGTG
GAGCCTTCGACGGCTGGCACCACCGAATCCGCCGGCCTTGGCCTGCTCACCGTCACCCTGCTTGCCCCGGAAACGCCGAT
CTTCGGCAAGATGCTGGTGGCGGCCGCTTTCGCGCTGGCCGGAACCGCACTTTTCCTGCGTATTCTGCGGCAGGTGCCGC
TGCGCGATGTGCTGCTGGTGCCGCTGATCGGCATCATGCTGGGCGGCGTCATTTCTGCCGTCACCACTTTCTTCGCCTAT
CGTTTCGATCTGCTACAATCGCTTGGCGCGTGGATGACCGGGGATTTTTCCGGCGTGCTGCGTGGCCGCTATGAATTGCT
GTGGATCGGTTTCGTTTTCGCCATCGCCGCCTATCTCGCCGCCGACCGTTTCACGGTGGCAGGCATGGGGCGCGACTTCA
CCACCAATCTCGGCCTGAACTATCGCCGGGTGATGGCGCTCGGCCTCACCATCGTCTCGCTGGTCAGTGCCGTCGTCGTC
GTCACGGTGGGCATGATCCCCTTTCTGGGCCTGATCGTGCCGAACGTCGTCAGCCTGATGATCGGCGACAATATGCGCCG
TTCCGTGCCTTGGGTGGCGACGCTTGGCGCGGTCTTCGTTCTAGCCTGCGACATCATCGGCAGAACGGTGCGCGCGCCCT
ATGAAGTGCCGATCGGAACGGTGGTCGGCGTCATCGGCAGTGCGCTGTTCCTCTATCTCCTGCTCCGGAAACGCCACCAT
GCATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

43.574

99.377

0.433