Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QIY60_RS13150 Genome accession   NZ_CP124863
Coordinates   2954681..2955802 (+) Length   373 a.a.
NCBI ID   WP_283142576.1    Uniprot ID   -
Organism   Streptomyces sp. BPTC-684     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2949681..2960802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIY60_RS13135 (QIY60_13135) dnaA 2949810..2951579 (+) 1770 WP_283142574.1 chromosomal replication initiator protein DnaA -
  QIY60_RS13140 (QIY60_13140) dnaN 2952508..2953638 (+) 1131 WP_101389151.1 DNA polymerase III subunit beta -
  QIY60_RS13145 (QIY60_13145) gnd 2953759..2954637 (+) 879 WP_283142575.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  QIY60_RS13150 (QIY60_13150) recF 2954681..2955802 (+) 1122 WP_283142576.1 DNA replication/repair protein RecF Machinery gene
  QIY60_RS13155 (QIY60_13155) - 2955799..2956350 (+) 552 WP_283142577.1 DciA family protein -
  QIY60_RS13160 (QIY60_13160) gyrB 2956765..2958828 (+) 2064 WP_283142578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40534.18 Da        Isoelectric Point: 6.8612

>NTDB_id=761669 QIY60_RS13150 WP_283142576.1 2954681..2955802(+) (recF) [Streptomyces sp. BPTC-684]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGADRAIIRAAVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELVTARSPRMAAVRSDYDRVLKQ
RNTLLKSAAMARRHGGRGMDLSTLDVWDQHLARTGAELLAQRLDLIATLQPLADKAYEQLAPGGGPVALEYRPSAQGEAV
TREDLYGQLMAALADVRKQEIERGVTLVGPHRDDLLLKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVLD
DVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLAGARYEVAAGEVARV

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=761669 QIY60_RS13150 WP_283142576.1 2954681..2955802(+) (recF) [Streptomyces sp. BPTC-684]
ATGCACGTCACGCATCTCTCACTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTTCCGCTCGACCCGGGCGTCACCGC
TTTCGTGGGCGCCAACGGCCAGGGCAAGACCAATCTCGTCGAAGCGGTCGGCTATCTGGCGACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCGCCGCTGGTGCGCATGGGCGCCGACCGGGCGATCATCCGCGCGGCCGTGACCCAGGGCGAGCGCTCC
CAGCTGATCGAGCTCGAGCTGAACCCGGGCCGGGCCAACCGGGCCCGTATCAACCGGTCCTCGCAGGTCAGACCGCGTGA
CGTGCTGGGGATAGTGCGGACCGTGCTCTTCGCGCCGGAGGATCTGGCGCTGGTCAAGGGCGACCCCGGCGAGCGGCGGC
GGTTCCTGGACGAGCTGGTCACCGCGCGCTCCCCGCGCATGGCGGCCGTCCGCTCCGACTACGACCGCGTCCTCAAACAG
CGCAACACCCTGCTGAAGTCGGCCGCGATGGCCCGCCGCCACGGTGGCCGTGGCATGGACCTGTCGACGCTCGACGTGTG
GGACCAGCATCTGGCGCGGACGGGCGCGGAGCTGCTCGCCCAGCGCCTCGACCTGATCGCGACGCTCCAGCCGCTCGCCG
ACAAGGCGTACGAGCAGCTGGCGCCCGGCGGCGGTCCGGTGGCGCTGGAGTACCGCCCCTCGGCGCAGGGCGAGGCCGTC
ACCCGTGAGGACCTGTACGGCCAGCTCATGGCCGCGCTCGCCGATGTGCGCAAGCAGGAGATCGAGCGGGGCGTCACCCT
TGTCGGGCCGCACCGCGACGACCTGCTGCTCAAGCTGGGCCAGCTCCCGGCCAAGGGGTACGCGAGCCACGGCGAGTCCT
GGTCGTACGCGCTGGCGCTGCGGCTCGCCTCGTACGACCTGCTGCGGGCCGAGGGCAACGAGCCGGTGCTTGTCCTGGAC
GACGTCTTCGCGGAGCTGGACGCCCGGCGCCGCGAACGGCTGGCGGAGCTGGTGGCTCCGGGCGAGCAGGTGCTGGTGAC
GGCGGCCGTGGACGACGACGTGCCGGGCGTCCTCGCGGGGGCGCGGTACGAGGTCGCCGCGGGGGAGGTGGCGCGGGTAT
GA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.244

94.638

0.362