Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QIY60_RS10220 Genome accession   NZ_CP124863
Coordinates   2282976..2284865 (-) Length   629 a.a.
NCBI ID   WP_283142112.1    Uniprot ID   -
Organism   Streptomyces sp. BPTC-684     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2277976..2289865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIY60_RS10205 (QIY60_10205) - 2279019..2280218 (-) 1200 WP_283142109.1 FAD-dependent oxidoreductase -
  QIY60_RS10210 (QIY60_10210) - 2280287..2281537 (-) 1251 WP_283142110.1 ATP-grasp domain-containing protein -
  QIY60_RS10215 (QIY60_10215) fahA 2281719..2282942 (+) 1224 WP_283142111.1 fumarylacetoacetase -
  QIY60_RS10220 (QIY60_10220) recQ 2282976..2284865 (-) 1890 WP_283142112.1 DNA helicase RecQ Machinery gene
  QIY60_RS10225 (QIY60_10225) nuoN 2285081..2286736 (-) 1656 WP_283142113.1 NADH-quinone oxidoreductase subunit NuoN -
  QIY60_RS10230 (QIY60_10230) - 2286733..2288304 (-) 1572 WP_283142114.1 NADH-quinone oxidoreductase subunit M -

Sequence

Protein


Download         Length: 629 a.a.        Molecular weight: 68549.89 Da        Isoelectric Point: 5.5917

>NTDB_id=761661 QIY60_RS10220 WP_283142112.1 2282976..2284865(-) (recQ) [Streptomyces sp. BPTC-684]
MNGTEGTVVEAEESMVGAAVESEALRTLNRVFGYESFRGDQGAVIEHVVAGGDAVVLMPTGAGKSLCYQIPALVRPGTGV
VVSPLIALMQDQVDALRALGVRAGFINSTQDFDERRTVEAELLAGELDLLYLAPERLRVEATLDLLSRAKIAVFAIDEAH
CVAQWGHDFRPDYLALSLLGERWPDVPRIALTATATRVTHREITDRLVMPKARHFEASFDRPNIQYRIVPKNDPKKQLLT
FLKEEHDGDAGIVYCLSRASVEKTAQYLSDNGVAAVPYHAGLDSGTRARHQSRFLREDGLVVVATIAFGMGIDKPDVRFV
AHLDLPKSVEGYYQETGRAGRDGLPSTAWMAYGLQDVVQQRKMIQGGEGDEAFRRRAAAHLDSMLALCETAGCRRAQLLG
YFGQEATAANCGNCDTCLNPPETWDGTVAAQKVLSTVVRLERERRQKFGAGQIIDILLGRKTAKVIQFDHDALSVFGIGE
ELSEAQWRGAVRQLLAQGLLAVEGEYGTLVLTETSGEVLGRQREVRLRSEPAKPERAPRARGAAKAKTSPADFPEEAAPL
FEALRAWRAAQAREQGVPAYVIFHDATLREIAVARPGSVEELGTIAGVGEKKLATYGEGVLEVLKGEQE

Nucleotide


Download         Length: 1890 bp        

>NTDB_id=761661 QIY60_RS10220 WP_283142112.1 2282976..2284865(-) (recQ) [Streptomyces sp. BPTC-684]
ATGAACGGGACGGAAGGGACGGTCGTGGAGGCTGAGGAGTCGATGGTCGGCGCGGCGGTCGAGAGCGAGGCGCTGCGGAC
GCTGAACCGGGTCTTCGGCTACGAGAGCTTCCGCGGCGACCAGGGCGCGGTCATCGAGCACGTGGTGGCCGGCGGGGACG
CCGTGGTGCTCATGCCGACGGGCGCCGGAAAATCGCTCTGCTACCAGATCCCGGCCCTGGTCAGACCCGGTACGGGTGTG
GTCGTCTCGCCGCTGATCGCCCTGATGCAGGACCAGGTGGACGCGCTGCGGGCGCTCGGTGTGCGGGCCGGGTTCATCAA
CTCCACGCAGGACTTCGACGAGCGCCGCACGGTGGAGGCGGAGCTCCTCGCGGGCGAGCTCGACCTGCTCTATCTGGCAC
CGGAGCGGCTGCGCGTGGAGGCGACGCTCGATCTGCTCTCCCGGGCCAAGATCGCGGTCTTCGCGATCGACGAGGCGCAC
TGCGTGGCGCAGTGGGGCCATGACTTCCGCCCGGACTACCTGGCGCTTTCGCTGCTGGGGGAGCGCTGGCCGGACGTGCC
GCGCATCGCGCTGACGGCGACGGCGACGCGGGTCACCCACCGGGAGATCACCGACCGCCTGGTGATGCCGAAGGCGCGCC
ACTTCGAGGCGAGCTTCGACCGGCCGAACATCCAGTACCGGATCGTGCCGAAGAACGACCCCAAGAAGCAGCTCCTGACC
TTCCTGAAGGAGGAGCACGACGGGGACGCGGGCATCGTCTACTGCCTGTCGCGCGCCTCCGTGGAGAAGACCGCGCAGTA
TCTGAGCGACAACGGCGTGGCGGCGGTGCCGTACCACGCGGGGCTCGACTCGGGCACGCGCGCGCGGCACCAGTCCCGCT
TCCTGCGGGAGGACGGCCTGGTCGTGGTGGCGACCATCGCGTTCGGCATGGGCATCGACAAGCCCGACGTGCGGTTCGTG
GCCCATCTGGACCTGCCCAAGTCGGTCGAGGGCTACTACCAGGAGACGGGCCGCGCGGGCCGCGACGGCCTGCCGTCCAC
GGCCTGGATGGCGTACGGCCTGCAGGACGTGGTCCAGCAGCGCAAGATGATCCAGGGAGGCGAGGGCGACGAGGCGTTCC
GGCGCCGGGCGGCCGCGCACCTGGACTCGATGCTGGCGCTCTGCGAGACGGCCGGGTGCCGCCGCGCCCAGCTCCTGGGC
TACTTCGGCCAGGAAGCCACGGCCGCGAACTGCGGCAACTGCGACACGTGTCTGAACCCGCCCGAGACCTGGGACGGCAC
GGTGGCCGCGCAGAAGGTGCTGTCCACGGTCGTGCGGCTGGAGCGGGAGCGGCGCCAGAAGTTCGGGGCGGGCCAGATCA
TCGACATCCTGCTCGGCCGCAAGACGGCCAAGGTGATCCAGTTCGACCACGACGCGCTGTCGGTGTTCGGCATCGGCGAG
GAGCTCTCCGAGGCGCAGTGGCGGGGCGCGGTGCGGCAGTTGCTCGCCCAGGGCCTGCTGGCGGTGGAGGGCGAGTACGG
GACGCTGGTCCTGACCGAGACCAGCGGCGAGGTCCTCGGGCGCCAGCGCGAGGTCAGGCTGCGCTCGGAACCGGCGAAGC
CGGAGCGCGCGCCCCGCGCACGGGGTGCGGCCAAGGCGAAGACGTCCCCGGCCGACTTCCCGGAAGAGGCGGCCCCGCTC
TTCGAGGCGCTGCGCGCCTGGCGGGCCGCGCAGGCCCGCGAGCAGGGCGTCCCGGCATACGTGATCTTCCACGACGCGAC
CCTGCGGGAGATCGCCGTCGCCCGCCCCGGCTCGGTGGAGGAGCTGGGCACGATCGCCGGGGTGGGCGAGAAGAAGCTGG
CGACGTACGGGGAGGGCGTGCTGGAGGTGCTGAAGGGGGAGCAGGAGTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(41-197)

Helicase conserved C-terminal domain (Helicase_C)

(236-342)

HRDC domain (HRDC)

(560-624)

RQC domain (RQC)

(420-534)

RecQ zinc-binding (RecQ_Zn_bind)

(355-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.04

95.707

0.364