Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QIY60_RS05085 Genome accession   NZ_CP124863
Coordinates   1151544..1153742 (-) Length   732 a.a.
NCBI ID   WP_283141346.1    Uniprot ID   -
Organism   Streptomyces sp. BPTC-684     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1146544..1158742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIY60_RS05055 (QIY60_05055) rnc 1147302..1148135 (-) 834 WP_101390333.1 ribonuclease III -
  QIY60_RS05060 (QIY60_05060) rpmF 1148155..1148328 (-) 174 WP_101390332.1 50S ribosomal protein L32 -
  QIY60_RS05065 (QIY60_05065) - 1148331..1149017 (-) 687 WP_283141343.1 DUF177 domain-containing protein -
  QIY60_RS05070 (QIY60_05070) - 1149214..1150266 (-) 1053 WP_283141344.1 ATP synthase F0 subunit B -
  QIY60_RS05075 (QIY60_05075) coaD 1150363..1150845 (-) 483 WP_283145821.1 pantetheine-phosphate adenylyltransferase -
  QIY60_RS05080 (QIY60_05080) rsmD 1150866..1151450 (-) 585 WP_283141345.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QIY60_RS05085 (QIY60_05085) recG 1151544..1153742 (-) 2199 WP_283141346.1 ATP-dependent DNA helicase RecG Machinery gene
  QIY60_RS05090 (QIY60_05090) - 1153848..1155446 (-) 1599 WP_283141347.1 DAK2 domain-containing protein -
  QIY60_RS05095 (QIY60_05095) rpmB 1155691..1155876 (+) 186 WP_003957616.1 50S ribosomal protein L28 -
  QIY60_RS05100 (QIY60_05100) thiD 1156069..1156866 (-) 798 WP_283141348.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QIY60_RS05105 (QIY60_05105) - 1156863..1157825 (-) 963 WP_283141349.1 thiamine-phosphate kinase -
  QIY60_RS05110 (QIY60_05110) - 1158074..1158307 (+) 234 WP_064070330.1 Lrp/AsnC ligand binding domain-containing protein -

Sequence

Protein


Download         Length: 732 a.a.        Molecular weight: 79599.16 Da        Isoelectric Point: 6.1954

>NTDB_id=761646 QIY60_RS05085 WP_283141346.1 1151544..1153742(-) (recG) [Streptomyces sp. BPTC-684]
MDRVPALDEPLKKLLGGPTAKVMAEQLDLHTVGDLLHHYPRRYEERGQLTKLAELPLDEDVTVVAQVADARVHTFNGGRG
QRLEITITDGSGRLQLVFFGRGIHKPHKDLLPGSRAMFAGKVSMFNRRLQLAHPTYAKLSADGDDSAEVVDSWAGALIPI
YPACKGLESWKIAKAVDAVLPSAQEAVDPLPASLREGRGFVPLPEALLKVHRPHTKDDVEQARQRLKWDEAFVLQVALAR
RRHADAQLPAVARRPAPDGLLDAFDAKLPFTLTDGQRTVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVDSG
GQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGSDLGTKVVLLTGSMGAPARRQALLDLVTGEAGIVIGTHALIEDKV
QFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAQDKP
HFLARAWERVREEVAKGHQAYVVCPRIGDDEDEKKAGRKKSKEDEAEKRPPLAVLDIAEQLRSGPLQGLRIEVLHGRMQP
DDKDDVMRRFAAGEVDALIATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEASAARAR
LNAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIEDEEVIAAAREEAVAVVGQDPDLERLPALRTALDAL
LDKDREQYLDKG

Nucleotide


Download         Length: 2199 bp        

>NTDB_id=761646 QIY60_RS05085 WP_283141346.1 1151544..1153742(-) (recG) [Streptomyces sp. BPTC-684]
ATGGATCGCGTGCCTGCGCTCGATGAACCCCTCAAGAAGCTGCTCGGCGGCCCCACCGCGAAGGTCATGGCCGAGCAGCT
CGACCTGCACACGGTCGGCGACCTCCTCCACCACTACCCGCGGCGGTACGAGGAGCGCGGCCAGCTGACCAAGCTGGCCG
AGCTGCCCCTCGACGAGGACGTGACGGTCGTCGCCCAGGTGGCCGACGCGCGCGTGCACACGTTCAACGGCGGCCGCGGC
CAGCGCCTGGAGATCACCATCACCGACGGCAGCGGCCGCCTCCAGCTGGTCTTCTTCGGCCGCGGCATCCACAAGCCGCA
CAAGGACCTGCTGCCCGGCAGCCGCGCGATGTTCGCGGGCAAGGTGTCGATGTTCAACCGCCGCCTCCAGCTCGCCCACC
CCACGTACGCGAAGCTGAGCGCCGACGGCGACGACTCCGCCGAGGTGGTGGACTCCTGGGCGGGCGCGCTCATCCCGATC
TACCCCGCCTGCAAGGGCCTGGAGTCCTGGAAGATCGCCAAGGCGGTCGACGCGGTACTGCCCAGCGCCCAGGAGGCCGT
CGACCCGCTACCTGCCTCCCTTCGGGAGGGCCGGGGCTTCGTCCCCCTGCCCGAGGCACTGCTCAAGGTCCACCGCCCGC
ACACCAAGGACGATGTGGAGCAGGCCCGCCAGCGGCTGAAGTGGGACGAGGCGTTCGTCCTCCAGGTGGCCCTGGCCCGG
CGCCGTCACGCGGACGCCCAACTGCCCGCCGTGGCCCGCAGACCCGCCCCCGACGGCCTGCTCGACGCCTTCGACGCCAA
GCTCCCGTTCACCCTCACCGACGGCCAGCGCACGGTCTCCAAGGAGATCTTCGACGACCTGGCGACGGAGCATCCGATGC
ACCGGCTGCTCCAGGGCGAGGTCGGATCGGGGAAGACCATGGTCGCCCTGCGCGCCATGCTCGCCGTGGTCGACAGCGGC
GGCCAGGCCGCCATGCTCGCGCCGACCGAGGTGCTGGCGCAGCAGCACCACCGGTCCATCACCGAGATGATGGGTGAGCT
GGCCGAAGGCGGGATGCTGGGCGGCTCCGACCTCGGTACCAAGGTCGTGCTGCTCACCGGGTCGATGGGCGCGCCCGCCC
GCCGCCAGGCGCTGCTCGACCTGGTCACCGGCGAGGCGGGAATCGTGATCGGCACGCACGCGCTGATCGAGGACAAGGTG
CAGTTCCACGACCTGGGCCTGGTCGTGGTCGACGAGCAGCACCGGTTCGGCGTCGAGCAGCGCGACGCCCTGCGCGGGAA
GGGCAAGCAGCCGCCGCACCTCCTGGTGATGACGGCCACGCCGATTCCGCGCACGGTCGCCATGACCGTCTTCGGCGACC
TGGAGACCTCCGTCCTGGACCAGCTCCCGGCGGGGCGTTCGCCCATCGCCAGCCATGTCGTCCCCGCCCAGGACAAGCCG
CACTTCCTGGCCCGCGCCTGGGAGCGGGTCCGCGAGGAGGTCGCCAAGGGCCACCAGGCGTACGTGGTGTGTCCGCGCAT
CGGTGACGACGAGGACGAGAAGAAGGCGGGCAGGAAGAAGTCCAAGGAGGACGAGGCCGAGAAGCGTCCGCCGCTCGCCG
TCCTCGACATCGCGGAGCAGCTCCGCTCGGGCCCGCTCCAGGGGCTGCGCATCGAGGTGCTGCACGGGCGGATGCAGCCC
GACGACAAGGACGACGTGATGCGCCGGTTCGCGGCCGGCGAGGTGGACGCGCTGATCGCGACCACGGTCATCGAGGTCGG
GGTGAACGTGCCGAACGCCACCGCGATGGTGATCATGGACGCGGACCGCTTCGGCGTCTCGCAGCTGCACCAGCTGCGCG
GCCGCGTCGGCCGTGGCTCGGCCCCGGGCCTGTGCCTGCTGGTCACCGAGATGCCGGAGGCGAGCGCGGCCAGGGCCCGG
CTGAACGCGGTGGCCGCGACCCTGGACGGCTTCGAGCTCTCCCGGATCGACCTGGAGCAGCGCCGCGAGGGCGATGTGCT
GGGCCAGGCCCAGTCGGGCGTGCGCTCGTCGCTGCGGATGCTCGCGGTCATCGAGGACGAGGAGGTGATCGCGGCGGCCC
GCGAGGAGGCGGTGGCCGTGGTGGGCCAGGACCCGGATCTGGAACGGCTGCCCGCACTGCGGACGGCGCTGGACGCCCTG
CTGGACAAGGACCGCGAGCAGTACCTCGACAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(542-619)

DEAD/DEAH box helicase (DEAD)

(294-446)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(647-708)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

39.08

95.082

0.372