Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LDM85_RS01070 Genome accession   NZ_AP024963
Coordinates   230927..231394 (+) Length   155 a.a.
NCBI ID   WP_223887641.1    Uniprot ID   -
Organism   Helicobacter pylori strain #5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 225927..236394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM85_RS01050 (OHP005_02210) grpE 226102..226677 (+) 576 WP_001916780.1 nucleotide exchange factor GrpE -
  LDM85_RS01055 (OHP005_02220) dnaK 226708..228570 (+) 1863 WP_029567819.1 molecular chaperone DnaK -
  LDM85_RS01060 (OHP005_02230) - 228812..229729 (+) 918 WP_223887640.1 O-acetylserine-dependent cystathionine beta-synthase -
  LDM85_RS01065 (OHP005_02240) - 229750..230892 (+) 1143 WP_140489818.1 cystathionine gamma-synthase -
  LDM85_RS01070 (OHP005_02250) luxS 230927..231394 (+) 468 WP_223887641.1 S-ribosylhomocysteine lyase Regulator
  LDM85_RS01075 (OHP005_02260) - 231584..233269 (+) 1686 WP_317984088.1 5'-nucleotidase C-terminal domain-containing protein -
  LDM85_RS01080 (OHP005_02270) tlpB 233473..235170 (+) 1698 WP_223887643.1 methyl-accepting chemotaxis protein TlpB -
  LDM85_RS01085 (OHP005_02280) - 235201..235983 (+) 783 WP_223887644.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17770.24 Da        Isoelectric Point: 6.3782

>NTDB_id=76164 LDM85_RS01070 WP_223887641.1 230927..231394(+) (luxS) [Helicobacter pylori strain #5]
MKTLKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIIKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHANYVVDWSP
MGCQTGFYLTVLNHDDYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRDEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=76164 LDM85_RS01070 WP_223887641.1 230927..231394(+) (luxS) [Helicobacter pylori strain #5]
ATGAAAACACTAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTATCAAATACGATGTGCGCTTCAAACAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGTAACCACGCTAATTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACGATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAACAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGAGCACAGAATTTAGCACGCGCTTTTTTAGACAAACGCGATGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

90.968

0.381