Detailed information NTG0761548

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: OR985_RS31390
• Genome accession: NZ_CP113272
• Coordinates: 3093468..3094628 (+)
• Length: 386 a.a.
• NCBI ID: WP_126228535.1
• Uniprot ID: -
• Organism: Burkholderia ambifaria strain CEP0996
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3088468..3099628

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OR985_RS31360 (OR985_19980)	-	3089082..3089690 (+)	609	WP_006753282.1	50S ribosomal protein L25/general stress protein Ctc	-
OR985_RS31365 (OR985_19975)	pth	3089820..3090419 (+)	600	WP_006760396.1	aminoacyl-tRNA hydrolase	-
OR985_RS31370 (OR985_19970)	hisC	3090545..3091612 (+)	1068	WP_175678171.1	histidinol-phosphate transaminase	-
OR985_RS31375 (OR985_19965)	-	3091717..3091983 (-)	267	WP_006760398.1	YfhL family 4Fe-4S dicluster ferredoxin	-
OR985_RS31380 (OR985_19960)	coaD	3092043..3092540 (-)	498	WP_006398238.1	pantetheine-phosphate adenylyltransferase	-
OR985_RS31385 (OR985_19955)	rsmD	3092652..3093266 (-)	615	WP_175678172.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
OR985_RS31390 (OR985_19950)	pilA	3093468..3094628 (+)	1161	WP_126228535.1	signal recognition particle-docking protein FtsY	Machinery gene
OR985_RS31395 (OR985_19945)	maiA	3094736..3095380 (-)	645	WP_165752057.1	maleylacetoacetate isomerase	-
OR985_RS31400 (OR985_19940)	ybiB	3095570..3096544 (+)	975	WP_175678173.1	DNA-binding protein YbiB	-
OR985_RS31405 (OR985_19935)	leuA	3096936..3098582 (+)	1647	WP_175678174.1	2-isopropylmalate synthase	-
OR985_RS31410 (OR985_19930)	-	3098726..3099109 (-)	384	WP_011657982.1	nuclear transport factor 2 family protein	-

Sequence

Protein

• Length: 386 a.a.
• Molecular weight: 41197.03 Da
• Isoelectric Point: 4.8019

>NTDB_id=761548 OR985_RS31390 WP_126228535.1 3093468..3094628(+) (pilA) [Burkholderia ambifaria strain CEP0996]
MFSFFKRFKKTQESDSTESQSADALQPDEPSDAPAADARQPIEAPPAPAQPQPAAPAVVMTVTPTNDGSDDVVEAVEIVP
PPTQDASAKKSWLTRLKTGLAKTGSSITGVFVNTKIDEDLYEELEAALLMSDAGVDATEYLLGALREKVKTGRLTDPQQV
KSALHDLLVELLKPLEKSLMLGRAQPLVMMITGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERN
NVTVVQQESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQNAL
TQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAVEFADALFD

Nucleotide

• Length: 1161 bp

>NTDB_id=761548 OR985_RS31390 WP_126228535.1 3093468..3094628(+) (pilA) [Burkholderia ambifaria strain CEP0996]
ATGTTCAGCTTCTTCAAACGATTCAAGAAAACGCAGGAGTCCGACTCCACGGAATCGCAATCGGCCGACGCGCTGCAACC
GGACGAGCCGTCCGACGCGCCCGCCGCCGATGCCCGTCAGCCGATCGAAGCACCGCCAGCGCCCGCGCAACCGCAACCGG
CCGCGCCGGCCGTCGTGATGACGGTCACGCCGACCAACGACGGCAGCGACGACGTCGTCGAAGCGGTCGAGATCGTGCCG
CCGCCGACGCAGGACGCCTCCGCGAAGAAATCGTGGCTCACCCGCCTGAAAACGGGGCTCGCGAAGACGGGTTCGAGCAT
CACCGGCGTGTTCGTCAACACGAAGATCGACGAGGATCTGTACGAAGAACTCGAAGCCGCGCTGCTGATGTCCGACGCCG
GCGTCGATGCGACAGAGTACCTGCTCGGTGCGCTGCGCGAGAAAGTGAAAACGGGCCGGCTGACCGATCCGCAGCAGGTG
AAGAGCGCGCTGCACGACCTGCTCGTCGAACTGCTGAAGCCGCTCGAGAAATCGCTGATGCTCGGCCGCGCGCAGCCGCT
CGTGATGATGATCACGGGCGTGAACGGCGCGGGCAAGACCACCAGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCG
ACCAGTCGGTGCTGCTGGCCGCGGGCGACACGTTCCGCGCGGCCGCGCGCGAACAGCTGGCGGTCTGGGGCGAGCGCAAC
AACGTGACGGTCGTCCAGCAGGAAAGTGGCGATCCGGCCGCGGTGATCTTCGACGCGGTCAGCGCCGCGCGCGCGCGCAA
GATCGACGTGATGATGGCCGACACGGCCGGCCGCCTGCCGACGCAGCTGCACCTGATGGAAGAGCTGAAGAAGGTGAAGC
GCGTGATCTCGAAGGCGCACGACGGCGCGCCGCACGAGGTGCTGCTCGTGATCGACGCGAACACCGGCCAGAACGCGCTC
ACGCAGGTGAAGGCCTTCGACGATGCGCTCGGCCTCACGGGCCTGATCGTCACGAAGCTCGACGGCACCGCCAAGGGCGG
GATTCTGGCGGCGATCGCGCGGCAGCGCCCGGTGCCCGTCTACTTCATCGGCGTCGGCGAGAAGGTCGAGGACCTGCAGC
CATTCAACGCCGTGGAATTCGCGGACGCGCTATTCGATTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (187-385)

• SRP54-type protein, helical bundle domain (SRP54_N) (104-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.225	100	0.578