Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   OR985_RS31295 Genome accession   NZ_CP113272
Coordinates   3076731..3078236 (+) Length   501 a.a.
NCBI ID   WP_175678165.1    Uniprot ID   -
Organism   Burkholderia ambifaria strain CEP0996     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3071731..3083236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OR985_RS31270 (OR985_20070) kdsD 3072963..3073946 (+) 984 WP_126228526.1 arabinose 5-phosphate isomerase KdsD -
  OR985_RS31275 (OR985_20065) - 3073946..3074482 (+) 537 WP_175678164.1 HAD family hydrolase -
  OR985_RS31280 (OR985_20060) lptC 3074486..3075100 (+) 615 WP_126228527.1 LPS export ABC transporter periplasmic protein LptC -
  OR985_RS31285 (OR985_20055) lptA 3075121..3075786 (+) 666 WP_011657963.1 lipopolysaccharide transport periplasmic protein LptA -
  OR985_RS31290 (OR985_20050) lptB 3075783..3076559 (+) 777 WP_011657964.1 LPS export ABC transporter ATP-binding protein -
  OR985_RS31295 (OR985_20045) rpoN/rpoN1 3076731..3078236 (+) 1506 WP_175678165.1 RNA polymerase factor sigma-54 Machinery gene
  OR985_RS31300 (OR985_20040) raiA 3078394..3078753 (+) 360 WP_006477786.1 ribosome-associated translation inhibitor RaiA -
  OR985_RS31305 (OR985_20035) - 3078923..3079462 (+) 540 WP_011657966.1 PTS sugar transporter subunit IIA -
  OR985_RS31310 (OR985_20030) hprK 3079592..3080560 (+) 969 WP_175678166.1 HPr(Ser) kinase/phosphatase -
  OR985_RS31315 (OR985_20025) rapZ 3080636..3081544 (+) 909 WP_041489859.1 RNase adapter RapZ -
  OR985_RS31320 (OR985_20020) - 3081571..3082206 (+) 636 WP_006752630.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54742.82 Da        Isoelectric Point: 4.9329

>NTDB_id=761547 OR985_RS31295 WP_175678165.1 3076731..3078236(+) (rpoN/rpoN1) [Burkholderia ambifaria strain CEP0996]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENEDEWITSPLRVASDGSLIAQGPSGQNIEPGP
ANGSSQSSERAERDEPAGADQYDGYGSGDAGDGPQWNLDEYGRSSGASDDDDLPPLQVQEAATSLRDHLSAQLRVTQASP
RDRALVMFLIESLDDDGYLTASLDEVLSDLPPELEVDGDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKHLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQGWLAELNPEVMP
RLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=761547 OR985_RS31295 WP_175678165.1 3076731..3078236(+) (rpoN/rpoN1) [Burkholderia ambifaria strain CEP0996]
ATGAAAGCCAGCCTTCAACTCCGCCTGTCGCAACACCTGGCGCTGACCCCGCAACTGCAGCAGTCGATCCGGCTCCTGCA
ACTGTCGACGCTCGAACTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAAAATCCGTTGCTCGAAAACGAAGACGAATGGA
TCACGAGTCCGCTGCGTGTCGCATCGGACGGATCGCTGATCGCGCAGGGGCCTTCCGGACAGAACATCGAGCCGGGCCCC
GCGAACGGCAGCAGCCAGTCGAGCGAGCGCGCCGAGCGCGACGAGCCGGCCGGCGCCGACCAATACGACGGCTACGGGTC
GGGCGACGCCGGCGACGGCCCGCAGTGGAATCTGGACGAGTACGGCCGCTCGAGCGGCGCGTCGGACGATGACGACCTCC
CGCCGCTGCAGGTGCAGGAAGCCGCGACGTCGCTGCGCGACCACCTGTCCGCGCAATTGCGCGTCACGCAGGCCAGCCCG
CGCGATCGCGCGCTCGTGATGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGACCGCATCGCTCGACGAAGTGCT
CTCCGACCTGCCGCCGGAACTGGAAGTCGACGGCGACGAACTGAATGCGGCGCTCGCGCTGCTGCACAGCTTCGACCCGG
CCGGGGTCGGGGCCCGCTCCGCCTCCGAATGCCTGAAGCTGCAGTTGCTGCGGCTCGATCCGTCCCCCACGCGCACGCTC
GCGCTGGAGATCGTGTCGCAGCACCTCGAACTGCTCGCCGCGCGCGACTTCACGCGGCTGCGCAAGCACCTGAAGGCGAG
CGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTGGAGCCGTTCCCCGGCGCCGCGTACGGCAAGGCCGAGG
CCGACTACGTCGTGCCCGACATCATCGTGAAGAAGGCCGGCCAGGGCTGGCTCGCGGAACTCAATCCGGAAGTGATGCCG
CGCCTGCGGATCAACAACCTGTACGCGAACATCCTGCGCAACAGCCGCGGCGATCCGTCGGCCGGGTCGCTCAAGCAGCA
GCTCCAGGAAGCACGCTGGCTGATCAAGAACATCCAGCAGCGATTCGACACGATCCTGCGTGTCGCGCAGGCCATTGTCG
AACGTCAAAAGAATTTCTTCGCGCATGGTGAAATCGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACAGGCAAGTACATGCTGACCCCGTTCGGTACGCTGGAATTCAAGTACTT
CTTCGGGTCACACGTTTCGACCGACACCGGAGGCGCCGCATCGTCGACCGCCATCCGAGCCCTGATCAAGCAACTGATAG
GAGCTGAAGACCCAAAATCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAGGGTTTCGTGGTTGCGCGC
CGCACGGTTGCCAAGTATCGCGAAGCCCTCAAAATCCCGGCAGTGAATCTGCGCAAGTCTCTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.515

100

0.691