Detailed information NTG0761444

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QLG17_RS22825
• Genome accession: NZ_CP124819
• Coordinates: 4595541..4596533 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain C325
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4590541..4601533

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QLG17_RS22795 (QLG17_22795)	ispD	4590602..4591312 (+)	711	WP_000246160.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QLG17_RS22800 (QLG17_22800)	ispF	4591312..4591791 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QLG17_RS22805 (QLG17_22805)	truD	4591788..4592837 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
QLG17_RS22810 (QLG17_22810)	surE	4592818..4593579 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QLG17_RS22815 (QLG17_22815)	pcm	4593573..4594199 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QLG17_RS22820 (QLG17_22820)	nlpD	4594384..4595478 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QLG17_RS22825 (QLG17_22825)	rpoS	4595541..4596533 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QLG17_RS22830 (QLG17_22830)	-	4596653..4597060 (-)	408	WP_001208062.1	MarR family transcriptional regulator	-
QLG17_RS22835 (QLG17_22835)	-	4597206..4597799 (+)	594	WP_000767721.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QLG17_RS22840 (QLG17_22840)	-	4597799..4599226 (+)	1428	Protein_4462	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QLG17_RS22845 (QLG17_22845)	-	4599237..4599473 (+)	237	WP_000562979.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QLG17_RS22850 (QLG17_22850)	pphB	4599514..4600170 (-)	657	WP_025380568.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=761444 QLG17_RS22825 WP_000081550.1 4595541..4596533(+) (rpoS) [Escherichia coli strain C325]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=761444 QLG17_RS22825 WP_000081550.1 4595541..4596533(+) (rpoS) [Escherichia coli strain C325]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715