Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LDM86_RS04300 Genome accession   NZ_AP024962
Coordinates   907107..908627 (-) Length   506 a.a.
NCBI ID   WP_223888859.1    Uniprot ID   -
Organism   Helicobacter pylori strain #3     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 902107..913627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM86_RS04290 (OHP003_08680) - 903673..904986 (-) 1314 WP_223888857.1 restriction endonuclease subunit S -
  LDM86_RS04295 (OHP003_08690) - 905022..907082 (-) 2061 WP_223888858.1 heavy metal translocating P-type ATPase -
  LDM86_RS04300 (OHP003_08700) comM 907107..908627 (-) 1521 WP_223888859.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LDM86_RS04305 (OHP003_08710) def 908630..909157 (-) 528 WP_220879891.1 peptide deformylase -
  LDM86_RS04310 (OHP003_08720) clpP 909162..909749 (-) 588 WP_000540571.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  LDM86_RS04315 (OHP003_08730) tig 909771..911126 (-) 1356 WP_223888860.1 trigger factor -
  LDM86_RS04320 (OHP003_08740) - 911239..912075 (-) 837 WP_223888861.1 outer membrane protein -
  LDM86_RS04325 (OHP003_08750) hpaA 912100..912882 (-) 783 WP_223888862.1 flagellar sheath lipoprotein HpaA -
  LDM86_RS04330 (OHP003_08760) moaC 913001..913477 (-) 477 WP_223888863.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57166.16 Da        Isoelectric Point: 8.3918

>NTDB_id=76143 LDM86_RS04300 WP_223888859.1 907107..908627(-) (comM) [Helicobacter pylori strain #3]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVVSRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFAQMEE
GNYKDTPSHSWTSKEMHQMVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=76143 LDM86_RS04300 WP_223888859.1 907107..908627(-) (comM) [Helicobacter pylori strain #3]
ATGATTAACACGATATTTTGTGCAACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAACTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAG
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAATTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATCAATCGC
ATGCGTTATATCTTGCCCCCATTAAGCTTGAATGAAATCCTAGAAGCAACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTACCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGGTTTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGTGCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGCGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACCTCAAAAGAGATGCATCAAATGGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAAGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.036

100

0.97
  comM Acinetobacter baylyi ADP1

36.008

100

0.364

Multiple sequence alignment