Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QLG17_RS07995 Genome accession   NZ_CP124819
Coordinates   1506135..1506764 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain C325     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1501135..1511764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLG17_RS07980 (QLG17_07980) helD 1501377..1503431 (-) 2055 WP_000420536.1 DNA helicase IV -
  QLG17_RS07985 (QLG17_07985) yccF 1503554..1504000 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QLG17_RS07990 (QLG17_07990) yccS 1504010..1506172 (+) 2163 WP_000875041.1 YccS family putative transporter -
  QLG17_RS07995 (QLG17_07995) sxy/tfoX 1506135..1506764 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QLG17_RS08000 (QLG17_08000) sulA 1506983..1507492 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QLG17_RS08005 (QLG17_08005) ompA 1507849..1508904 (+) 1056 WP_000750414.1 porin OmpA -
  QLG17_RS08010 (QLG17_08010) matP 1508979..1509431 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QLG17_RS08015 (QLG17_08015) ycbZ 1509617..1511377 (+) 1761 WP_000156509.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=761391 QLG17_RS07995 WP_000839153.1 1506135..1506764(-) (sxy/tfoX) [Escherichia coli strain C325]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=761391 QLG17_RS07995 WP_000839153.1 1506135..1506764(-) (sxy/tfoX) [Escherichia coli strain C325]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1