Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   OS912_RS01510 Genome accession   NZ_CP113266
Coordinates   309490..310299 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain BC1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 304490..315299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS912_RS01495 (OS912_01500) - 306940..308826 (-) 1887 WP_000150984.1 Eco57I restriction-modification methylase domain-containing protein -
  OS912_RS01500 (OS912_01505) - 308901..309155 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE family toxin -
  OS912_RS01505 (OS912_01510) relB 309157..309399 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  OS912_RS01510 (OS912_01515) vicX 309490..310299 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  OS912_RS01515 (OS912_01520) micB 310301..311650 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  OS912_RS01520 (OS912_01525) micA 311643..312347 (-) 705 WP_000722076.1 response regulator YycF Regulator
  OS912_RS01525 (OS912_01530) mutY 312402..313577 (-) 1176 WP_050202456.1 A/G-specific adenine glycosylase -
  OS912_RS01530 (OS912_01535) - 313674..313799 (+) 126 WP_001818232.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=761378 OS912_RS01510 WP_001289493.1 309490..310299(-) (vicX) [Streptococcus pneumoniae strain BC1]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=761378 OS912_RS01510 WP_001289493.1 309490..310299(-) (vicX) [Streptococcus pneumoniae strain BC1]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773