Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LDM86_RS01045 Genome accession   NZ_AP024962
Coordinates   216918..217385 (+) Length   155 a.a.
NCBI ID   WP_015645536.1    Uniprot ID   -
Organism   Helicobacter pylori strain #3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 211918..222385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM86_RS01025 (OHP003_02140) dnaK 212117..213979 (+) 1863 WP_223889274.1 molecular chaperone DnaK -
  LDM86_RS01030 - 214118..214695 (-) 578 Protein_199 hypothetical protein -
  LDM86_RS01035 (OHP003_02170) - 214803..215720 (+) 918 WP_223889275.1 O-acetylserine-dependent cystathionine beta-synthase -
  LDM86_RS01040 (OHP003_02180) - 215741..216883 (+) 1143 WP_096467893.1 cystathionine gamma-synthase -
  LDM86_RS01045 (OHP003_02190) luxS 216918..217385 (+) 468 WP_015645536.1 S-ribosylhomocysteine lyase Regulator
  LDM86_RS01050 (OHP003_02200) - 217565..219265 (+) 1701 WP_317983378.1 5'-nucleotidase C-terminal domain-containing protein -
  LDM86_RS01055 (OHP003_02210) tlpB 219476..221161 (+) 1686 WP_223889277.1 methyl-accepting chemotaxis protein TlpB -
  LDM86_RS01060 (OHP003_02220) - 221191..221973 (+) 783 WP_223889278.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17664.16 Da        Isoelectric Point: 6.8403

>NTDB_id=76127 LDM86_RS01045 WP_015645536.1 216918..217385(+) (luxS) [Helicobacter pylori strain #3]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRLKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRTEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=76127 LDM86_RS01045 WP_015645536.1 216918..217385(+) (luxS) [Helicobacter pylori strain #3]
ATGAAAACACCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCCTCAAACAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTTGCTGAGATTATCCGTAACCATGCCAGTTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
AATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCTAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCACAGAATTTAGCGCGCGCTTTTTTAGACAAACGCACTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

90.968

0.368

Multiple sequence alignment