Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ORP33_RS12055 Genome accession   NZ_CP113256
Coordinates   2364854..2365657 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain K1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2359854..2370657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORP33_RS12030 (ORP33_11790) glpQB 2360999..2361730 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  ORP33_RS12035 (ORP33_11795) yqiI 2361809..2362429 (-) 621 WP_225722043.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ORP33_RS12040 (ORP33_11800) yqiH 2362444..2362737 (-) 294 WP_003230284.1 lipoprotein -
  ORP33_RS12045 (ORP33_11805) - 2363045..2363197 (+) 153 WP_225722044.1 hypothetical protein -
  ORP33_RS12050 (ORP33_11810) yqiG 2363270..2364388 (+) 1119 WP_225722045.1 NADH-dependent flavin oxidoreductase -
  ORP33_RS12055 (ORP33_11815) spo0A 2364854..2365657 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ORP33_RS12060 (ORP33_11820) spoIVB 2365933..2367213 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  ORP33_RS12065 (ORP33_11825) recN 2367388..2369118 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  ORP33_RS12070 (ORP33_11830) argR 2369155..2369604 (-) 450 WP_003230265.1 arginine repressor ArgR -
  ORP33_RS12075 (ORP33_11835) yqxC 2369702..2370547 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=761257 ORP33_RS12055 WP_003226427.1 2364854..2365657(-) (spo0A) [Bacillus subtilis strain K1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=761257 ORP33_RS12055 WP_003226427.1 2364854..2365657(-) (spo0A) [Bacillus subtilis strain K1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1