Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ORP33_RS11070 Genome accession   NZ_CP113256
Coordinates   2187383..2188003 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain K1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2182383..2193003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORP33_RS11030 (ORP33_10795) ptsA 2183516..2184022 (-) 507 WP_029726788.1 PTS sugar transporter subunit IIA -
  ORP33_RS11035 (ORP33_10800) ypqA 2184158..2184577 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  ORP33_RS11040 (ORP33_10805) sppG 2184598..2184975 (-) 378 WP_004398696.1 YppG family protein -
  ORP33_RS11045 (ORP33_10810) yppF 2185163..2185351 (+) 189 WP_003230690.1 YppF family protein -
  ORP33_RS11050 (ORP33_10815) yppE 2185390..2185761 (-) 372 WP_225722031.1 YppE family protein -
  ORP33_RS11055 (ORP33_10820) yppD 2185807..2186052 (-) 246 WP_004398488.1 YppD family protein -
  ORP33_RS11060 (ORP33_10825) sspM 2186251..2186355 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ORP33_RS11065 (ORP33_10830) yppC 2186380..2187342 (-) 963 WP_131227527.1 DUF2515 domain-containing protein -
  ORP33_RS11070 (ORP33_10835) recU 2187383..2188003 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ORP33_RS11075 (ORP33_10840) ponA 2188025..2190775 (+) 2751 WP_225722032.1 transglycosylase domain-containing protein -
  ORP33_RS11080 (ORP33_10845) ypoC 2190851..2191345 (-) 495 WP_029726783.1 YpoC family protein -
  ORP33_RS11085 (ORP33_10850) nth 2191342..2192001 (-) 660 WP_009967580.1 endonuclease III -
  ORP33_RS11090 (ORP33_10855) dnaD 2192020..2192718 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=761256 ORP33_RS11070 WP_004399067.1 2187383..2188003(+) (recU) [Bacillus subtilis strain K1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=761256 ORP33_RS11070 WP_004399067.1 2187383..2188003(+) (recU) [Bacillus subtilis strain K1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1