Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ORP33_RS08655 Genome accession   NZ_CP113256
Coordinates   1658127..1658906 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain K1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1653127..1663906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORP33_RS08635 (ORP33_08510) trmFO 1653820..1655127 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ORP33_RS08640 (ORP33_08515) xerC 1655195..1656109 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  ORP33_RS08645 (ORP33_08520) clpQ 1656122..1656667 (+) 546 WP_076457719.1 ATP-dependent protease subunit ClpQ -
  ORP33_RS08650 (ORP33_08525) hslU 1656684..1658087 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  ORP33_RS08655 (ORP33_08530) codY 1658127..1658906 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ORP33_RS08660 (ORP33_08535) flgB 1659286..1659675 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  ORP33_RS08665 (ORP33_08540) flgC 1659675..1660127 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  ORP33_RS08670 (ORP33_08545) fliE 1660138..1660458 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ORP33_RS08675 (ORP33_08550) fliF 1660504..1662114 (+) 1611 WP_213414488.1 flagellar basal-body MS-ring/collar protein FliF -
  ORP33_RS08680 (ORP33_08555) fliG 1662127..1663143 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ORP33_RS08685 (ORP33_08560) fliH 1663136..1663888 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=761253 ORP33_RS08655 WP_003220850.1 1658127..1658906(+) (codY) [Bacillus subtilis strain K1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=761253 ORP33_RS08655 WP_003220850.1 1658127..1658906(+) (codY) [Bacillus subtilis strain K1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467