Detailed information NTG0761142

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJ974_RS06800
• Genome accession: NZ_CP124670
• Coordinates: 1442364..1443368 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 2021CK-01536
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1437364..1448368

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJ974_RS06770 (QJ974_06770)	fghA	1437456..1438307 (+)	852	WP_004345459.1	S-formylglutathione hydrolase	-
QJ974_RS06775 (QJ974_06775)	ispF	1438378..1438851 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJ974_RS06780 (QJ974_06780)	truD	1438848..1439915 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
QJ974_RS06785 (QJ974_06785)	surE	1439903..1440652 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QJ974_RS06790 (QJ974_06790)	-	1440685..1441320 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QJ974_RS06795 (QJ974_06795)	-	1441366..1442259 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
QJ974_RS06800 (QJ974_06800)	rpoS	1442364..1443368 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QJ974_RS06805 (QJ974_06805)	fdxA	1443794..1444117 (-)	324	WP_003092272.1	ferredoxin FdxA	-
QJ974_RS06810 (QJ974_06810)	mutS	1444184..1446751 (-)	2568	WP_125075372.1	DNA mismatch repair protein MutS	-
QJ974_RS06815 (QJ974_06815)	-	1446877..1447884 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=761142 QJ974_RS06800 WP_003113871.1 1442364..1443368(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01536]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=761142 QJ974_RS06800 WP_003113871.1 1442364..1443368(+) (rpoS) [Pseudomonas aeruginosa strain 2021CK-01536]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653