Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   QJ974_RS03675 Genome accession   NZ_CP124670
Coordinates   751043..753886 (-) Length   947 a.a.
NCBI ID   WP_014602449.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2021CK-01536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 746043..758886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJ974_RS03645 (QJ974_03645) rpsK 746164..746553 (+) 390 WP_003093689.1 30S ribosomal protein S11 -
  QJ974_RS03650 (QJ974_03650) rpsD 746570..747190 (+) 621 WP_003093678.1 30S ribosomal protein S4 -
  QJ974_RS03655 (QJ974_03655) rpoA 747213..748214 (+) 1002 WP_003093675.1 DNA-directed RNA polymerase subunit alpha -
  QJ974_RS03660 (QJ974_03660) rplQ 748258..748647 (+) 390 WP_003093672.1 50S ribosomal protein L17 -
  QJ974_RS03665 (QJ974_03665) katA 748929..750377 (+) 1449 WP_003103909.1 catalase KatA -
  QJ974_RS03670 (QJ974_03670) bfr 750508..750972 (+) 465 WP_003093668.1 bacterioferritin -
  QJ974_RS03675 (QJ974_03675) uvrA 751043..753886 (-) 2844 WP_014602449.1 excinuclease ABC subunit UvrA Machinery gene
  QJ974_RS03680 (QJ974_03680) - 754100..755488 (+) 1389 WP_003103910.1 MFS transporter -
  QJ974_RS03685 (QJ974_03685) ssb 755505..756002 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  QJ974_RS03690 (QJ974_03690) pchA 756091..757521 (-) 1431 WP_014602457.1 isochorismate synthase PchA -
  QJ974_RS03695 (QJ974_03695) pchB 757518..757823 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  QJ974_RS03700 (QJ974_03700) pchC 757823..758578 (-) 756 WP_014602458.1 pyochelin biosynthesis editing thioesterase PchC -

Sequence

Protein


Download         Length: 947 a.a.        Molecular weight: 104723.29 Da        Isoelectric Point: 6.4808

>NTDB_id=761136 QJ974_RS03675 WP_014602449.1 751043..753886(-) (uvrA) [Pseudomonas aeruginosa strain 2021CK-01536]
MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDQVLALPEGSKLMLLAPVIRERKG
EHLAVFDEMRAQGFVRARVDGKLYELDEVPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALSLADGIALVAPMDED
EDEDVEEIIFSARFACPVCGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDARRVVNGELTLAEGAIRGWDRRNVYYF
QMLGSLAQHYGFSLEEPFDELGAEHQKVVLYGSGRENVDFRYLNDRGDIVKRSHPFEGILPNLERRYRETESATVREELA
KFLSTQPCPDCHGTRLRREARHVWVGDRTLPAITAMPVGEACEYAAGLSLTGRRGEIAAKILKEIRDRLQFLVNVGLDYL
TLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLTHLRNLGNTVIVVEHDEDAIRLADYVV
DIGPGAGVHGGQVVAEGTPDQVMNHPDSLTGKYLSGRKKIAVPAKRTPRDKKKLLKLKGARGNNLQNVNLEIPVGLFTCI
TGVSGSGKSTLINNTLFPITATALNGATTLEVAPYDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFSGV
PEARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEIRYKGKSIHEVLEMTIEEARE
FFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRL
RDHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIANGTPEQVAEMSQSHTGHFLKPLLERDRA

Nucleotide


Download         Length: 2844 bp        

>NTDB_id=761136 QJ974_RS03675 WP_014602449.1 751043..753886(-) (uvrA) [Pseudomonas aeruginosa strain 2021CK-01536]
GTGGATAAGATCCTGATTCGTGGGGCGCGTACCCACAACCTGAAGAACGTCGACCTCACACTGCCACGCGACAAACTGAT
CGTGATCACCGGTCTTTCCGGTTCCGGCAAGTCTTCCCTGGCTTTCGACACGCTCTATGCGGAAGGCCAGCGGCGCTACG
TGGAATCCCTCTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAGAAGCCGGACGTGGACACCATCGAAGGGCTGTCG
CCGGCGATTTCCATCGAACAGAAGTCCACTTCCCACAACCCACGCTCCACCGTGGGTACGATCACCGAGATCTACGACTA
CCTGCGCCTGCTTTATGCCCGCGTCGGTACCCCGCGCTGCCCGGACCACGACATCCCGCTGGAGGCGCAGACCGTCAGCC
AGATGGTCGACCAGGTCCTGGCCCTGCCGGAAGGCAGCAAGCTGATGCTGCTGGCGCCGGTGATCCGCGAGCGCAAGGGC
GAGCACCTGGCGGTGTTCGACGAGATGCGCGCGCAGGGCTTCGTCCGCGCCCGGGTCGACGGCAAGCTCTACGAACTCGA
CGAAGTGCCGAAGCTGGATAAGCAGAAGAAGCACAGCATCGATGTGGTGGTGGACCGCTTCAAGGTTCGCGCGGACCTCC
AGCAACGCCTGGCCGAGTCGTTCGAGACCGCCCTGTCCCTGGCCGACGGTATCGCCCTGGTAGCACCGATGGACGAGGAC
GAGGACGAGGATGTCGAGGAGATCATCTTCTCGGCGCGCTTCGCCTGCCCGGTCTGCGGCCACTCTATCAGCGAGCTGGA
ACCCAAGCTGTTCTCCTTCAACAACCCGGCCGGCGCCTGTCCGACCTGCGACGGCCTCGGCGTGAAGCAATTCTTCGACG
CGCGCCGGGTGGTCAACGGCGAGTTGACCCTGGCCGAGGGCGCGATCCGCGGCTGGGACCGGCGCAACGTCTATTACTTC
CAGATGCTCGGTTCGCTGGCCCAGCATTACGGCTTCAGCCTGGAAGAACCCTTCGACGAACTCGGCGCCGAACACCAGAA
GGTGGTGCTCTACGGCTCCGGCCGGGAAAACGTCGACTTCCGCTATCTCAACGACCGCGGCGACATCGTCAAGCGCTCGC
ACCCCTTCGAAGGCATCCTGCCGAACCTTGAGCGGCGCTACCGCGAGACCGAGTCGGCCACGGTCCGCGAGGAGCTGGCC
AAGTTCCTCAGCACCCAGCCCTGCCCGGATTGCCACGGTACCCGCCTGCGCCGCGAGGCGCGGCATGTGTGGGTCGGCGA
CCGGACGCTGCCGGCGATCACCGCGATGCCGGTCGGCGAAGCCTGCGAGTATGCCGCCGGACTCAGCCTGACCGGCCGCC
GTGGCGAGATCGCGGCGAAGATCCTCAAGGAAATCCGCGACCGCCTGCAATTCCTGGTCAACGTCGGCCTCGACTACCTG
ACCCTCGACCGCAGCGCCGACACCCTGTCCGGCGGCGAAGCCCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGCCT
GGTGGGAGTGATGTACATCCTCGACGAACCCTCGATCGGCCTGCACCAACGCGACAACGAGCGCCTGCTCGGCACCCTCA
CCCACCTGCGCAACCTCGGCAACACGGTGATCGTGGTCGAGCACGACGAGGACGCGATCCGACTCGCCGACTACGTCGTC
GACATCGGTCCGGGCGCCGGCGTGCACGGCGGCCAGGTAGTGGCGGAAGGTACGCCCGACCAGGTGATGAACCACCCCGA
CTCGCTGACCGGCAAGTACCTTTCCGGGCGCAAGAAAATCGCGGTTCCGGCCAAGCGCACCCCGCGCGACAAGAAGAAGC
TGCTGAAGCTGAAAGGCGCCCGCGGCAACAACCTGCAGAACGTCAACCTGGAAATCCCGGTCGGCCTGTTCACCTGCATC
ACCGGGGTCTCGGGCTCCGGCAAGTCGACGCTGATCAACAACACCCTGTTCCCGATCACCGCCACCGCGCTGAACGGCGC
GACTACCCTGGAAGTGGCGCCGTACGACTCGTTCGACGGCCTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCC
CGATCGGTCGTACCCCGCGCTCCAACCCGGCGACCTATACCGGCCTGTTCACGCCGATCCGCGAACTGTTTTCCGGCGTG
CCGGAGGCCCGCTCGCGCGGCTACGGTCCCGGCCGCTTCTCGTTCAACGTCAAGGGCGGCCGTTGCGAGGCCTGCCAGGG
CGACGGCGTGATCAAGGTGGAGATGCACTTCCTGCCGGATATCTACGTTCCCTGCGATGTCTGCAAGGGCAAGCGCTACA
ACCGCGAGACCCTGGAGATCCGCTACAAGGGCAAGAGCATCCACGAGGTGCTGGAGATGACCATCGAGGAAGCCCGCGAG
TTCTTCGACGCCGTCCCCGCCCTGGCGCGCAAGCTGCAGACGCTGATGGACGTCGGCCTGTCCTACATCAAGCTGGGCCA
GAGCGCGACCACCCTCTCGGGCGGCGAGGCGCAGCGGGTCAAGCTGTCCCGCGAGCTGTCCAAGCGCGATACCGGCAAGA
CCCTGTACATCCTCGACGAACCGACCACCGGCCTGCATTTCGCCGACATCCAGCAACTGCTCGACGTGCTCCACCGCCTG
CGCGACCACGGCAACACCGTGGTGGTGATCGAGCACAACCTGGACGTGATCAAGACCGCCGACTGGCTGGTCGACCTCGG
CCCCGAGGGCGGCTCCAAGGGTGGCCAGATCATCGCCAACGGCACGCCAGAGCAGGTGGCCGAGATGTCCCAGTCGCACA
CCGGCCACTTCCTCAAGCCGTTGCTGGAACGCGATCGCGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(293-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.113

100

0.572
  uvrA Streptococcus pneumoniae TIGR4

57.113

100

0.572
  uvrA Streptococcus pneumoniae D39

57.113

100

0.572