Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OOK74_RS10480 Genome accession   NZ_CP113241
Coordinates   2278519..2279526 (-) Length   335 a.a.
NCBI ID   WP_274722577.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2273519..2284526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS10455 rraA 2274126..2274638 (-) 513 WP_274722582.1 ribonuclease E activity regulator RraA -
  OOK74_RS10460 - 2274713..2275630 (-) 918 WP_278182756.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OOK74_RS10465 hslU 2275720..2277051 (-) 1332 WP_278182757.1 HslU--HslV peptidase ATPase subunit -
  OOK74_RS10470 hslV 2277073..2277645 (-) 573 WP_274722579.1 ATP-dependent protease subunit HslV -
  OOK74_RS10475 ftsN 2277790..2278359 (-) 570 WP_274722578.1 cell division protein FtsN -
  OOK74_RS10480 cytR 2278519..2279526 (-) 1008 WP_274722577.1 DNA-binding transcriptional regulator CytR Regulator
  OOK74_RS10485 priA 2279857..2282061 (-) 2205 WP_278182758.1 primosomal protein N' -
  OOK74_RS10490 rpmE 2282315..2282533 (+) 219 WP_166014149.1 50S ribosomal protein L31 -
  OOK74_RS10495 - 2282813..2284090 (+) 1278 WP_278182759.1 malic enzyme-like NAD(P)-binding protein -
  OOK74_RS10500 metJ 2284200..2284517 (-) 318 WP_166014147.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37094.75 Da        Isoelectric Point: 6.9464

>NTDB_id=761117 OOK74_RS10480 WP_274722577.1 2278519..2279526(-) (cytR) [Vibrio sp. gvc]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEQGYLVLLGDSGQQKRRESSFVNLVLTKQADGMVLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPPHAVLCQFRQQGYQQALRRAGIPMMPNYSTFGDFTFEAGVKAVRQLLALPEQPTA
IFCHNDTMAIGAMQEAKRLGWRVPQDLSVVGFDDIQFSQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPNKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=761117 OOK74_RS10480 WP_274722577.1 2278519..2279526(-) (cytR) [Vibrio sp. gvc]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCCGGAGTGTCGACCGCCACCGTATCGCGTGCGTTGATGAATCCTGAAAA
AGTCTCATCTTCGACGCGTAAGCGAGTGGAAGAGGCGGTGCTGGAAGCGGGTTATTCACCAAATTCTTTAGCGCGTAATC
TGCGTCGTAACGAGTCAAAAACCATCGTGGCGATCGTGCCTGATATCTGTGATCCCTATTTTTCAGAGATTATTCGCGGC
ATTGAAGATGCGGCGATGGAGCAAGGGTATCTGGTGTTATTGGGTGATAGTGGTCAACAGAAGCGTCGGGAAAGCTCGTT
TGTCAATTTGGTATTGACCAAACAAGCGGATGGCATGGTGCTACTGGGGACCGATCTGCCGTTTGATGTCAGCAAACCAG
AGCAGAAAAACCTGCCGCCAATGGTGATGGCGTGTGAATTTGCCCCAGAACTTGAGTTGCCAACCGTGCATATTGATAAC
CTCACCTCAGCCTTTGAAGCGGTGAACTATTTAACTCAGCTTGGACACAAACGCATTGCACAAATTTCAGGCCCGCCTCA
CGCGGTGCTGTGTCAATTTCGTCAGCAAGGTTATCAACAGGCATTGCGCCGCGCTGGTATCCCGATGATGCCCAATTACA
GCACGTTTGGCGATTTCACGTTTGAAGCAGGGGTTAAAGCGGTGCGTCAATTACTGGCATTGCCAGAGCAGCCGACCGCG
ATTTTCTGTCACAACGACACCATGGCGATTGGTGCGATGCAAGAAGCGAAACGCTTAGGTTGGCGGGTACCACAAGATTT
GTCGGTGGTCGGTTTTGACGATATTCAATTTTCGCAATATTGCGACCCACCCCTGACCACGATTTCTCAACCGCGTTATG
AAATTGGTCGTCAAGCGATGTTGATGATGCTGGAACTGTTGCGTGGCCATGATGTGCGCGCGGGTTCTCGTTTATTGGAA
ACTAAGCTGGTGGTGCGTGAGAGTGCGGCTCCGCCCAATAAAAAATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

95.224

100

0.952
  cytR Vibrio parahaemolyticus RIMD 2210633

89.82

99.701

0.896