Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OOK74_RS05080 Genome accession   NZ_CP113241
Coordinates   1056403..1057827 (-) Length   474 a.a.
NCBI ID   WP_274722107.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1051403..1062827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS05055 - 1051665..1052444 (-) 780 WP_278183210.1 phosphoribosylglycinamide formyltransferase -
  OOK74_RS05060 purT 1052832..1054007 (-) 1176 WP_278183211.1 phosphoribosylglycinamide formyltransferase 2 -
  OOK74_RS05065 cdd 1054207..1055094 (-) 888 WP_278183212.1 cytidine deaminase -
  OOK74_RS05070 - 1055329..1056003 (-) 675 WP_274721995.1 CidB/LrgB family autolysis modulator -
  OOK74_RS05075 - 1055994..1056368 (-) 375 WP_166013138.1 CidA/LrgA family protein -
  OOK74_RS05080 sbcB 1056403..1057827 (-) 1425 WP_274722107.1 exodeoxyribonuclease I Machinery gene
  OOK74_RS05085 - 1057971..1059341 (-) 1371 WP_274721994.1 L-cystine transporter -
  OOK74_RS05090 cobT 1059757..1060782 (+) 1026 WP_274721993.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  OOK74_RS05095 - 1060782..1061567 (+) 786 WP_274721992.1 adenosylcobinamide-GDP ribazoletransferase -
  OOK74_RS05100 cobU 1061576..1062115 (+) 540 WP_274721991.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  OOK74_RS05105 - 1062123..1062731 (+) 609 WP_274721990.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54832.14 Da        Isoelectric Point: 5.7806

>NTDB_id=761098 OOK74_RS05080 WP_274722107.1 1056403..1057827(-) (sbcB) [Vibrio sp. gvc]
MQQEHQPTFFFLDYETWGVNPAQDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPGPEAALITGITPQTANQQGLPEP
EFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVMRACHALRPDGIVWPENEQGFT
SFKLEHLSVANGIEHSNAHDAMADVLATIELAKKIKAAQPKLFEYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERQY
TSWIVPIAWHPTNQNAVIVVDLAKDPQPLFDLDAETLHDRLYTRYEDLAADEQPVPVKLVHLNKCPILAPAKTLTAENAE
QIGIDRAQCLAHLQLIRQHPEIREKLVNVFSQSREFSQAQDVDSQLYDGFFSPADRAAMEIIRTTDPDYLASLAIRVADK
RIEPLLFRYRARHYPQTLNDSEQRRWAAHCRDYFERHLESYMLNLENLVLEHQADQKKMAILKSVYHYVERLAY

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=761098 OOK74_RS05080 WP_274722107.1 1056403..1057827(-) (sbcB) [Vibrio sp. gvc]
ATGCAGCAAGAACACCAACCCACTTTTTTCTTCCTCGATTATGAGACTTGGGGAGTTAATCCCGCGCAAGATCGTCCTAG
TCAGTTTGCCGGTGTTCGAACCGATATGGATTTCAACATCATTGGCGAGCCGCTGGTAATTTACTGTCAATTGCCGAATG
ATTATTTACCTGGCCCAGAAGCGGCGCTGATCACTGGCATTACCCCACAAACCGCTAACCAGCAAGGTTTGCCTGAACCG
GAATTTATTGCACGGATCCACGCGGAGCTCTCCACGCCAAATACCATTAGCCTTGGCTATAACAGCATCCGTTTTGATGA
TGAAGTGACTCGCTATACTTGCTATCGCAACTTTATTGACCCTTATGCCTGGAGCTGGCAGCACGGTAACTCGCGCTGGG
ATCTGCTTGATGTGATGCGCGCTTGTCACGCATTGCGCCCAGATGGGATCGTCTGGCCGGAAAATGAGCAAGGCTTTACC
AGCTTTAAGTTGGAGCACCTTTCAGTGGCCAATGGCATAGAACACAGCAACGCGCACGATGCAATGGCCGATGTGCTGGC
CACCATTGAGTTGGCCAAAAAAATTAAAGCGGCCCAGCCGAAGCTGTTTGAGTATTTTTTCACCATGCGCCACAAGCGTA
AACTGACCGAATTGATTGATATTGTAAATCAAACTCCACTGATGCATGTTTCCGGCATGCTGGGGCGTGAGCGTCAATAC
ACCAGTTGGATTGTGCCGATTGCTTGGCATCCCACCAACCAAAATGCAGTCATTGTGGTCGATTTGGCCAAAGATCCTCA
GCCACTCTTCGATCTGGATGCGGAAACCTTGCACGATCGTCTTTATACTCGTTATGAAGATTTAGCCGCCGATGAACAGC
CAGTGCCGGTGAAACTGGTGCATCTTAATAAGTGCCCAATCCTCGCGCCGGCCAAAACCCTAACCGCAGAGAATGCCGAG
CAGATCGGTATTGATCGCGCCCAATGTCTGGCCCATTTGCAGTTGATCCGTCAGCATCCTGAAATTCGTGAAAAATTGGT
CAACGTATTTAGTCAATCACGGGAGTTTAGCCAAGCACAAGATGTGGATAGCCAGCTGTACGATGGATTCTTCTCACCCG
CCGATCGCGCCGCAATGGAGATCATCCGCACCACCGACCCCGACTATCTCGCTAGTTTAGCGATTCGCGTGGCCGATAAA
CGCATCGAGCCCCTGCTCTTTCGCTATCGCGCACGCCATTATCCACAAACGTTAAATGATAGTGAACAACGTCGCTGGGC
AGCACATTGCCGCGACTATTTCGAACGCCATCTTGAGAGTTATATGCTTAATTTGGAAAACTTAGTTCTTGAACATCAAG
CTGACCAAAAGAAAATGGCAATTCTAAAATCGGTTTACCATTACGTTGAACGACTGGCTTATTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

90.275

99.789

0.901