Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OOK74_RS02235 Genome accession   NZ_CP113241
Coordinates   452757..453275 (+) Length   172 a.a.
NCBI ID   WP_274722389.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 447757..458275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS02225 - 448165..451020 (+) 2856 WP_278183248.1 pitrilysin family protein -
  OOK74_RS02230 gshA 451131..452705 (+) 1575 WP_278183043.1 glutamate--cysteine ligase -
  OOK74_RS02235 luxS 452757..453275 (+) 519 WP_274722389.1 S-ribosylhomocysteine lyase Regulator
  OOK74_RS02240 - 453363..454640 (-) 1278 WP_274722390.1 HlyC/CorC family transporter -
  OOK74_RS02245 - 454724..455518 (-) 795 WP_278183044.1 inner membrane protein YpjD -
  OOK74_RS02250 ffh 455854..457236 (+) 1383 WP_278183045.1 signal recognition particle protein -
  OOK74_RS02255 rpsP 457473..457721 (+) 249 WP_166013634.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18989.79 Da        Isoelectric Point: 6.2841

>NTDB_id=761092 OOK74_RS02235 WP_274722389.1 452757..453275(+) (luxS) [Vibrio sp. gvc]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTLPNQDILSERGIHTLEHLYAGFMRQHLNGREVEIIDISP
MGCRTGFYMSLIGAPSEQQVATAWLASMHDVLKVASQAHIPELNRYQCGTAAMHSLAEAQAIAQQVITAGIAVNRNEELA
LPEAMLHQLNAN

Nucleotide


Download         Length: 519 bp        

>NTDB_id=761092 OOK74_RS02235 WP_274722389.1 452757..453275(+) (luxS) [Vibrio sp. gvc]
ATGCCATTATTAGACAGTTTCACGGTTGATCATACTCGTATGCAGGCACCTGCGGTGCGGGTGGCTAAAACGATGCAAAC
CCCCAAAGGGGATACTATTACGGTGTTTGATCTGCGGTTTACCTTGCCCAATCAGGACATTTTGTCTGAGCGGGGTATTC
ATACTCTAGAGCACTTGTATGCCGGATTTATGCGTCAGCATTTAAATGGCCGCGAGGTGGAAATCATCGATATTTCGCCT
ATGGGCTGTCGTACCGGTTTTTATATGAGCTTGATTGGTGCGCCTAGCGAGCAGCAAGTGGCGACGGCTTGGTTAGCGTC
CATGCACGATGTGCTGAAAGTCGCAAGCCAAGCGCATATCCCTGAGTTAAATCGATACCAATGTGGCACGGCAGCAATGC
ACTCACTGGCAGAAGCACAAGCGATTGCCCAGCAAGTGATTACCGCTGGTATTGCCGTGAACCGTAATGAAGAGTTGGCA
CTACCGGAAGCGATGCTTCATCAGCTAAACGCTAACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.799

98.256

0.843