Detailed information NTG0761089

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OOK74_RS02095
• Genome accession: NZ_CP113241
• Coordinates: 425830..426837 (+)
• Length: 335 a.a.
• NCBI ID: WP_277207478.1
• Uniprot ID: -
• Organism: Vibrio sp. gvc
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 420830..431837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OOK74_RS02060	ftsB	420856..421140 (+)	285	WP_278183028.1	cell division protein FtsB	-
OOK74_RS02065	ispD	421137..421835 (+)	699	WP_278183029.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OOK74_RS02070	ispF	421832..422308 (+)	477	WP_274722365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OOK74_RS02075	truD	422364..423449 (+)	1086	WP_278183030.1	tRNA pseudouridine(13) synthase TruD	-
OOK74_RS02080	surE	423451..424203 (+)	753	WP_274722367.1	5'/3'-nucleotidase SurE	-
OOK74_RS02085	-	424196..424822 (+)	627	WP_277207482.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OOK74_RS02090	-	424822..425757 (+)	936	WP_278183031.1	peptidoglycan DD-metalloendopeptidase family protein	-
OOK74_RS02095	rpoS	425830..426837 (+)	1008	WP_277207478.1	RNA polymerase sigma factor RpoS	Regulator
OOK74_RS02100	mutS	427083..429668 (-)	2586	WP_278183032.1	DNA mismatch repair protein MutS	-
OOK74_RS02105	cysM	429820..430710 (-)	891	WP_278183033.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38586.29 Da
• Isoelectric Point: 4.3516

>NTDB_id=761089 OOK74_RS02095 WP_277207478.1 425830..426837(+) (rpoS) [Vibrio sp. gvc]
MSVSNTVTKIEEFDFEDEALEELTTDDELTNDEASTTAESSSEDVREEFDASTKNLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARNRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEDIALELNKPVDDVTKMLRLNERISSVDIPIGGDGDKALLDILP
DSHTADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=761089 OOK74_RS02095 WP_277207478.1 425830..426837(+) (rpoS) [Vibrio sp. gvc]
ATGAGTGTCAGTAATACTGTAACCAAAATAGAAGAGTTTGATTTTGAAGATGAAGCTCTGGAAGAGCTCACAACCGATGA
TGAACTCACCAATGATGAAGCATCCACCACTGCGGAAAGCTCCAGTGAGGATGTTCGTGAAGAATTTGATGCATCAACCA
AAAACCTTGATGCAACACAAATGTACCTCAGCGAGATTGGTTTTTCACCACTGCTGACTGCCGAAGAAGAAGTACTGTAT
GCTCGTCGTGCATTACGTGGCGATGAAGCGGCACGTAACCGCATGATTGAAAGTAACTTGCGCTTAGTGGTGAAAATTTC
CCGTCGTTACAGTAACCGCGGACTCGCGCTGCTCGATCTGATTGAAGAGGGAAATCTTGGCTTGATTCGAGCGGTTGAAA
AATTTGACCCCGAACGTGGTTTTCGCTTTTCAACCTATGCCACTTGGTGGATCCGTCAGACCATCGAACGGGCGTTAATG
AACCAGACTCGCACTATTCGTCTGCCGATCCATGTGGTCAAAGAGCTGAATATTTACCTACGTACCGCTCGTGAGTTATC
GCAGCGCCTTGACCACGAACCTACGCCAGAAGATATTGCTCTCGAACTCAATAAGCCAGTCGATGACGTGACCAAAATGT
TGCGTCTTAATGAGCGTATCAGCTCGGTGGATATCCCGATTGGTGGCGATGGTGACAAAGCATTACTGGATATTTTGCCT
GATTCGCATACCGCAGATCCGGAGTTTTCCACACAAGATGATGATATTCGCGAATCATTGCTCAATTGGCTTGATGAGTT
AAATCCAAAGCAAAAAGAGGTGTTAGCGCGCCGCTTTGGTCTGCTTGGCTATGAGCCATCGACCTTGGAAGAGGTGGGAC
GTGAGATCAACCTAACCCGTGAGCGGGTGCGTCAAATCCAAGTGGAAGGTTTACGTCGTCTGCGGGAGATTTTGGTCAAA
CAAGGGCTGAATATGGAAGCGCTGTTTAATGTTGAATATGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 3 (Sigma70_r3) (175-248)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	94.03	100	0.94