Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LDN16_RS13220 Genome accession   NZ_AP024961
Coordinates   2972378..2973169 (-) Length   263 a.a.
NCBI ID   WP_027266322.1    Uniprot ID   -
Organism   Legionella pneumophila strain 80-045     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2967378..2978169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDN16_RS13205 (LEG80045_25750) legS1 2968390..2969547 (-) 1158 WP_027266325.1 Dot/Icm T4SS effector LegS1 -
  LDN16_RS15385 - 2969919..2970053 (-) 135 WP_263422039.1 hypothetical protein -
  LDN16_RS13210 - 2970183..2970353 (-) 171 WP_154219851.1 hypothetical protein -
  LDN16_RS13215 (LEG80045_25760) dacB 2970493..2972286 (-) 1794 WP_027266323.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  LDN16_RS13220 (LEG80045_25770) spo0J 2972378..2973169 (-) 792 WP_027266322.1 ParB/RepB/Spo0J family partition protein Regulator
  LDN16_RS13225 (LEG80045_25780) ceg33 2973286..2973789 (-) 504 WP_027266321.1 Dot/Icm T4SS effector Ceg33 -
  LDN16_RS13230 (LEG80045_25790) - 2973963..2974712 (-) 750 WP_027266320.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  LDN16_RS13235 (LEG80045_25800) rsmB 2974709..2975992 (-) 1284 WP_027266319.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LDN16_RS13240 (LEG80045_25810) fmt 2975989..2976933 (-) 945 WP_027266318.1 methionyl-tRNA formyltransferase -
  LDN16_RS13245 (LEG80045_25820) def 2976930..2977442 (-) 513 WP_010948295.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30113.25 Da        Isoelectric Point: 5.7320

>NTDB_id=76108 LDN16_RS13220 WP_027266322.1 2972378..2973169(-) (spo0J) [Legionella pneumophila strain 80-045]
MQTRFTYLPVTSLQAGQYQPRQDFNVTELQELAQSISSQGLIEPLVVRPIAKERYEIIAGERRWRAAKLAGLNEVPCLIG
DYSDQQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
HARVLIGLNPEQQEMFAHQVIGEEWSVRYLEQEIKSYKNKDTNSPKNPRKDRDIERLQTILAEQVGAPVQIVNDGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=76108 LDN16_RS13220 WP_027266322.1 2972378..2973169(-) (spo0J) [Legionella pneumophila strain 80-045]
ATGCAAACCCGATTTACTTATTTACCTGTTACAAGCCTACAGGCAGGTCAGTATCAACCCAGGCAAGATTTTAATGTAAC
GGAGTTACAGGAATTGGCTCAGTCAATTTCTTCCCAGGGTTTAATTGAACCTTTGGTGGTAAGACCCATAGCAAAAGAGC
GATATGAAATTATTGCAGGGGAAAGAAGGTGGCGTGCGGCCAAATTGGCGGGATTAAATGAAGTCCCTTGTTTGATTGGA
GATTATAGTGATCAACAGGCATGTGCTCTCACTTTAATCGAAAATATTCAACGTCAGGATTTGAATTTAATCGAGGAAGC
CACTGGTTATAAGCGTTTAATTGAAGAATTCCATTATCATCAGGACGAGATCGCAGCGTTGGTAGGTAAATCTCGTAGCC
ATGTCGCAAATATTCTTCGTCTCCTTACCTTGACAGATAAGGTTAAACAGTTGGTTCGAGACAAAGTGCTATCCTTTGGC
CATGCTCGTGTATTGATTGGTTTAAATCCTGAACAACAAGAAATGTTTGCTCACCAGGTTATTGGAGAGGAATGGTCTGT
CAGGTACTTAGAGCAAGAAATTAAATCTTATAAAAATAAAGATACGAACAGTCCCAAAAATCCCAGAAAAGACAGAGATA
TTGAGCGGTTACAGACTATCCTGGCTGAACAAGTGGGGGCTCCTGTACAAATTGTAAACGATGGCGAAGACGGAGGTTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGATTGGGCTTGAGATATGATTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-96)

HTH domain found in ParB protein (HTH_ParB)

(146-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

37.308

98.859

0.369

Multiple sequence alignment