Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QKA38_RS18860 Genome accession   NZ_CP124669
Coordinates   4052792..4053388 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain 2021CK-01494     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4047792..4058388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKA38_RS18835 (QKA38_18835) - 4048186..4048335 (-) 150 Protein_3726 hypothetical protein -
  QKA38_RS18840 (QKA38_18840) - 4048428..4050011 (+) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  QKA38_RS18845 (QKA38_18845) - 4050008..4050895 (+) 888 WP_003087246.1 SDR family NAD(P)-dependent oxidoreductase -
  QKA38_RS18850 (QKA38_18850) - 4050969..4051508 (+) 540 WP_003103931.1 CbrC family protein -
  QKA38_RS18855 (QKA38_18855) - 4051521..4052669 (-) 1149 WP_003111078.1 acyl-CoA dehydrogenase family protein -
  QKA38_RS18860 (QKA38_18860) recR 4052792..4053388 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  QKA38_RS18865 (QKA38_18865) - 4053467..4053793 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  QKA38_RS18870 (QKA38_18870) dnaX 4053839..4055932 (-) 2094 WP_126071268.1 DNA polymerase III subunit gamma/tau -
  QKA38_RS18875 (QKA38_18875) - 4055969..4056835 (+) 867 WP_078450976.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=761069 QKA38_RS18860 WP_003087237.1 4052792..4053388(-) (recR) [Pseudomonas aeruginosa strain 2021CK-01494]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=761069 QKA38_RS18860 WP_003087237.1 4052792..4053388(-) (recR) [Pseudomonas aeruginosa strain 2021CK-01494]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGGACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGGATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48