Detailed information    

insolico Bioinformatically predicted

Overview


Name   rec2   Type   Machinery gene
Locus tag   ORU23_RS05200 Genome accession   NZ_CP113236
Coordinates   1078342..1080735 (-) Length   797 a.a.
NCBI ID   WP_164905894.1    Uniprot ID   -
Organism   Pasteurella multocida strain PF8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1023737..1083063 1078342..1080735 within 0


Gene organization within MGE regions


Location: 1023737..1083063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORU23_RS04875 (ORU23_04875) gyrA 1023737..1026418 (+) 2682 WP_193627948.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  ORU23_RS04880 (ORU23_04880) - 1026494..1026862 (+) 369 WP_076090513.1 SirB2 family protein -
  ORU23_RS04885 (ORU23_04885) - 1027072..1028838 (-) 1767 WP_076090515.1 TadE/TadG family type IV pilus assembly protein -
  ORU23_RS04890 (ORU23_04890) tadF 1028858..1029421 (-) 564 WP_010906877.1 tight adherence pilus pseudopilin TadF -
  ORU23_RS04895 (ORU23_04895) - 1029450..1030037 (-) 588 WP_010906878.1 TadE/TadG family type IV pilus assembly protein -
  ORU23_RS04900 (ORU23_04900) - 1030053..1030826 (-) 774 WP_010906879.1 tetratricopeptide repeat protein -
  ORU23_RS04905 (ORU23_04905) - 1030816..1031670 (-) 855 WP_078801778.1 type II secretion system F family protein -
  ORU23_RS04910 (ORU23_04910) - 1031667..1032551 (-) 885 WP_041422604.1 type II secretion system F family protein -
  ORU23_RS04915 (ORU23_04915) - 1032552..1033829 (-) 1278 WP_010906882.1 CpaF family protein -
  ORU23_RS04920 (ORU23_04920) - 1033849..1034970 (-) 1122 WP_010906883.1 CpaE family protein -
  ORU23_RS04925 (ORU23_04925) - 1034987..1035490 (-) 504 WP_076090517.1 protein RcpB -
  ORU23_RS04930 (ORU23_04930) - 1035487..1036899 (-) 1413 WP_076090519.1 type II and III secretion system protein family protein -
  ORU23_RS04935 (ORU23_04935) - 1036896..1037708 (-) 813 WP_010906886.1 SAF domain-containing protein -
  ORU23_RS04940 (ORU23_04940) - 1037751..1038143 (-) 393 WP_076090521.1 prepilin peptidase -
  ORU23_RS04945 (ORU23_04945) - 1038208..1038390 (-) 183 WP_076090523.1 Flp family type IVb pilin -
  ORU23_RS04950 (ORU23_04950) - 1038491..1038715 (-) 225 WP_225529762.1 Flp family type IVb pilin -
  ORU23_RS04955 (ORU23_04955) - 1039880..1040902 (-) 1023 WP_195188493.1 site-specific integrase -
  ORU23_RS04960 (ORU23_04960) - 1040905..1041357 (-) 453 WP_225529761.1 hypothetical protein -
  ORU23_RS04965 (ORU23_04965) - 1041357..1041932 (-) 576 WP_015981971.1 phage repressor protein CI -
  ORU23_RS04970 (ORU23_04970) - 1042050..1042262 (+) 213 WP_078801976.1 hypothetical protein -
  ORU23_RS04975 (ORU23_04975) - 1042334..1042576 (-) 243 WP_225529760.1 hypothetical protein -
  ORU23_RS04980 (ORU23_04980) - 1042655..1042837 (+) 183 WP_005725390.1 hypothetical protein -
  ORU23_RS04985 (ORU23_04985) - 1042830..1043165 (+) 336 WP_078801781.1 hypothetical protein -
  ORU23_RS04990 (ORU23_04990) - 1043146..1043355 (+) 210 WP_078801782.1 hypothetical protein -
  ORU23_RS04995 (ORU23_04995) - 1043369..1043620 (+) 252 WP_015981978.1 hypothetical protein -
  ORU23_RS05000 (ORU23_05000) - 1043626..1043901 (+) 276 WP_015981979.1 hypothetical protein -
  ORU23_RS05005 (ORU23_05005) - 1043928..1046321 (+) 2394 Protein_960 replication endonuclease -
  ORU23_RS05010 (ORU23_05010) - 1046335..1046586 (+) 252 WP_015981981.1 hypothetical protein -
  ORU23_RS05015 (ORU23_05015) - 1046589..1046861 (+) 273 WP_015981982.1 hypothetical protein -
  ORU23_RS05020 (ORU23_05020) - 1046875..1047129 (+) 255 WP_015981983.1 hypothetical protein -
  ORU23_RS05025 (ORU23_05025) - 1047098..1047638 (+) 541 Protein_964 phage N-6-adenine-methyltransferase -
  ORU23_RS05030 (ORU23_05030) - 1047681..1047956 (-) 276 WP_005725620.1 ogr/Delta-like zinc finger family protein -
  ORU23_RS05035 (ORU23_05035) - 1048032..1049063 (-) 1032 WP_078801785.1 phage portal protein -
  ORU23_RS05040 (ORU23_05040) - 1049068..1050876 (-) 1809 WP_078801786.1 terminase ATPase subunit family protein -
  ORU23_RS05045 (ORU23_05045) - 1051082..1051969 (+) 888 WP_078801787.1 GPO family capsid scaffolding protein -
  ORU23_RS05050 (ORU23_05050) - 1051973..1052980 (+) 1008 WP_078801788.1 phage major capsid protein, P2 family -
  ORU23_RS05055 (ORU23_05055) - 1053001..1053867 (+) 867 WP_078801789.1 terminase endonuclease subunit -
  ORU23_RS05060 (ORU23_05060) - 1053840..1054292 (+) 453 WP_078801790.1 head completion/stabilization protein -
  ORU23_RS05065 (ORU23_05065) - 1054289..1054822 (+) 534 WP_078801791.1 phage tail protein -
  ORU23_RS05070 (ORU23_05070) - 1054819..1055508 (+) 690 WP_078801792.1 hypothetical protein -
  ORU23_RS05075 (ORU23_05075) - 1055527..1056657 (+) 1131 WP_225529759.1 DUF2586 domain-containing protein -
  ORU23_RS05080 (ORU23_05080) - 1056662..1057114 (+) 453 WP_005725160.1 phage protein -
  ORU23_RS05085 (ORU23_05085) - 1057195..1057404 (+) 210 WP_005725162.1 phage holin -
  ORU23_RS05090 (ORU23_05090) - 1057391..1057948 (+) 558 WP_078801794.1 lysozyme -
  ORU23_RS05095 (ORU23_05095) - 1057945..1058331 (+) 387 WP_078801795.1 hypothetical protein -
  ORU23_RS12090 lysC 1058237..1058458 (+) 222 WP_370597324.1 Rz1-like lysis system protein LysC -
  ORU23_RS05100 (ORU23_05100) - 1058465..1058773 (+) 309 WP_078801796.1 putative phage tail assembly chaperone -
  ORU23_RS12095 - 1058830..1058952 (+) 123 WP_016533247.1 DUF6890 family protein -
  ORU23_RS05105 (ORU23_05105) - 1058966..1061086 (+) 2121 WP_078801797.1 phage tail tape measure protein -
  ORU23_RS05110 (ORU23_05110) - 1061090..1061428 (+) 339 WP_005725175.1 DUF2590 family protein -
  ORU23_RS05115 (ORU23_05115) - 1061421..1062587 (+) 1167 WP_078801798.1 baseplate J/gp47 family protein -
  ORU23_RS05120 (ORU23_05120) - 1062587..1063180 (+) 594 WP_225529768.1 phage tail protein -
  ORU23_RS05125 (ORU23_05125) - 1063218..1066073 (+) 2856 WP_078801800.1 phage tail protein -
  ORU23_RS05130 (ORU23_05130) - 1066084..1066848 (+) 765 WP_016533395.1 hypothetical protein -
  ORU23_RS05135 (ORU23_05135) - 1066835..1067407 (+) 573 WP_071523714.1 hypothetical protein -
  ORU23_RS05140 (ORU23_05140) - 1067404..1069005 (+) 1602 WP_078801801.1 hypothetical protein -
  ORU23_RS05145 (ORU23_05145) - 1069846..1070082 (+) 237 WP_078801802.1 hypothetical protein -
  ORU23_RS05150 (ORU23_05150) - 1070136..1070525 (+) 390 WP_164905893.1 DUF1870 family protein -
  ORU23_RS05155 (ORU23_05155) - 1070528..1071454 (+) 927 WP_078801804.1 AcrVA2 family anti-CRISPR protein -
  ORU23_RS05170 (ORU23_05170) pgsA 1072047..1072604 (-) 558 WP_005751628.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ORU23_RS05175 (ORU23_05175) uvrC 1072700..1074535 (-) 1836 WP_078737851.1 excinuclease ABC subunit UvrC -
  ORU23_RS05180 (ORU23_05180) kdsB 1074560..1075336 (-) 777 WP_076090527.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ORU23_RS05185 (ORU23_05185) - 1075338..1075520 (-) 183 WP_076090529.1 Trm112 family protein -
  ORU23_RS05190 (ORU23_05190) lpxK 1075532..1076509 (-) 978 WP_076090531.1 tetraacyldisaccharide 4'-kinase -
  ORU23_RS05195 (ORU23_05195) msbA 1076541..1078289 (-) 1749 WP_078737852.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ORU23_RS05200 (ORU23_05200) rec2 1078342..1080735 (-) 2394 WP_164905894.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ORU23_RS05205 (ORU23_05205) dksA 1081032..1081469 (+) 438 WP_225529758.1 RNA polymerase-binding protein DksA -
  ORU23_RS05210 (ORU23_05210) pcnB 1081558..1083063 (+) 1506 WP_016533715.1 polynucleotide adenylyltransferase PcnB -

Sequence


Protein


Download         Length: 797 a.a.        Molecular weight: 91190.58 Da        Isoelectric Point: 9.8258

>NTDB_id=761063 ORU23_RS05200 WP_164905894.1 1078342..1080735(-) (rec2) [Pasteurella multocida strain PF8]
MKNALLSMSVVTVFSACSLLWLPEHFLLHWHITLLVFALLLVSIIICVLCGKNHWISPLIFVMSSVGILGYIHDQARQTL
LQADLVVQLPRKIETEFKIIEVLQQKNYQTFVVSAQLSPQQAKQKMILQWHAQEKAQIGEIWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLREGVKQTMQLEYQGLLLALAFGERAWLPTDIWQTYQKTSTAHVIAI
SGLHIGLAMGIGYFFIRLIQFLLPLKWVTPTLPIIVGLLFAWFYAELAGFSIPTSRAFFALTVVSWVKLWRRSYSVWQFF
LLVVALLLLGEPCMILSSSFWLSVGAVSVLMLWYQIFPLSLLHWRGKKITERPWRNCRWFFSLLHLQLGLLWLFTPVQLL
LFQGIALTSFMANVFVVPIYSVILIPLILLAVITQGAFSSWSIANTVAKYVTMLLTPLQSHWVVFSQQEILCLIAILALT
FIILIWYLYDFKKESLKCYAKVPRFFHLNQMRLLNPSLKWKTYLLAVGISLYCFLQILYKEISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGIELEQVILSHDDNDHVGGAETILKHYPQVKLMTASAQNYGKTDRT
FCEAGKTWTWQHLTFKALSPTKIVKRAKNTDSCVLLISDGSHHLLLTGDADIAAEKQFVNQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTAVYNTGELGQISLLFHAKHIEIQTARTDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=761063 ORU23_RS05200 WP_164905894.1 1078342..1080735(-) (rec2) [Pasteurella multocida strain PF8]
ATGAAAAACGCTCTTTTGTCAATGTCTGTTGTGACCGTATTCAGCGCATGTTCGTTACTTTGGCTACCTGAACATTTCTT
GCTTCATTGGCACATAACATTGTTAGTCTTCGCATTATTGCTAGTCAGCATAATCATTTGTGTTCTTTGTGGCAAAAATC
ACTGGATTTCGCCTCTGATCTTTGTAATGAGTTCAGTAGGTATTTTAGGCTATATTCACGATCAAGCTCGTCAGACATTA
TTGCAAGCGGACTTGGTTGTTCAACTGCCTCGAAAGATAGAGACAGAATTTAAAATCATTGAAGTACTACAACAAAAAAA
CTATCAAACTTTTGTGGTTTCAGCACAATTATCTCCGCAACAAGCAAAACAAAAAATGATTCTTCAATGGCACGCGCAAG
AAAAGGCACAGATAGGGGAGATTTGGAAAGGAGAGCTACGGCTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTCGCCAAAGGCATTACCGCTTATGCAACGGTAAAAAGTGCGGTCAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTGCGAGAGGGAGTGAAACAGACCATGCAGCTGGAATATCAAGGGCTGTTACTTGCACTGG
CTTTTGGTGAACGGGCATGGTTACCCACAGACATTTGGCAAACTTATCAAAAAACCAGCACAGCACATGTGATTGCGATA
TCGGGTTTACATATTGGGCTTGCGATGGGAATAGGTTATTTCTTTATTCGTTTAATTCAGTTCCTATTGCCATTAAAGTG
GGTGACACCGACCTTGCCAATCATTGTTGGGCTTCTTTTTGCATGGTTTTATGCTGAGTTGGCGGGCTTTAGTATTCCAA
CATCACGCGCGTTTTTTGCTTTAACTGTCGTGTCGTGGGTAAAACTTTGGCGGCGTTCTTATTCTGTTTGGCAATTTTTT
TTATTAGTTGTTGCTTTGTTATTGCTAGGTGAACCATGTATGATTTTATCGAGCAGTTTCTGGCTGTCGGTTGGTGCTGT
GAGTGTATTAATGCTTTGGTATCAAATTTTTCCGCTGTCTTTATTACATTGGCGAGGAAAAAAGATCACAGAGCGTCCTT
GGCGCAACTGTCGTTGGTTCTTTAGTCTTCTTCATTTACAACTTGGCTTATTGTGGCTTTTTACTCCCGTTCAATTATTG
CTTTTTCAGGGAATAGCTTTAACGAGCTTTATGGCGAATGTGTTTGTGGTGCCTATTTATAGTGTGATTTTAATACCATT
GATTTTATTGGCGGTGATCACTCAAGGGGCATTTTCCTCTTGGTCTATTGCAAATACTGTTGCGAAATACGTCACGATGC
TTTTAACTCCATTACAATCTCATTGGGTTGTATTCTCACAGCAGGAAATACTCTGCCTGATCGCGATCTTAGCTTTAACT
TTTATTATATTGATTTGGTATCTCTATGATTTTAAAAAAGAATCACTGAAGTGCTACGCTAAAGTACCACGTTTTTTTCA
TCTTAATCAAATGAGGCTGTTAAATCCGTCTTTAAAATGGAAAACTTATTTACTCGCTGTTGGCATCAGTCTTTACTGTT
TCTTACAGATACTTTATAAGGAGATATCTCAACCGCTTTGGCGTTTAGATACGCTCGATGTTGGACAAGGGTTAGCTAAC
TTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCGTCTTGGGCGGGAGGAAGTATGGCGGAACTGGAAAT
TATACCCTATTTACAAAGAGAGGGGATTGAGTTAGAACAGGTGATTTTAAGCCATGATGATAATGATCATGTTGGGGGCG
CGGAAACAATTCTAAAACATTACCCTCAAGTGAAGCTGATGACGGCGTCTGCTCAAAATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGTAAAACCTGGACTTGGCAACACTTAACATTCAAAGCCCTTTCACCGACTAAAATAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTCATCATCTCCTCTTAACTGGTGATGCAGATATTGCTG
CGGAAAAGCAGTTTGTGAATCAGTTAAGTCAACTTGATGTGTTACAAGTTGGACATCATGGCAGTAAAACGTCAACAGGG
TATGAACTTCTTTATCAAACACGACCAAAAATCGCACTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGGCTGTATATAACACTGGTGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCTAAACACATCGAAATTCAAACCGCAAGAACGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.003

100

0.511