Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QKA38_RS09330 Genome accession   NZ_CP124669
Coordinates   1986716..1987045 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2021CK-01494     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1981716..1992045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QKA38_RS09315 (QKA38_09315) - 1982416..1983375 (+) 960 WP_004350973.1 SDR family oxidoreductase -
  QKA38_RS09320 (QKA38_09320) - 1983372..1984397 (+) 1026 WP_023097381.1 glycosyltransferase family 4 protein -
  QKA38_RS09325 (QKA38_09325) - 1984528..1986525 (+) 1998 WP_023097382.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  QKA38_RS09330 (QKA38_09330) comEA/comE1 1986716..1987045 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  QKA38_RS09340 (QKA38_09340) - 1987262..1988458 (-) 1197 WP_003130537.1 amino acid aminotransferase -
  QKA38_RS09345 (QKA38_09345) uvrB 1988646..1990658 (+) 2013 WP_015502637.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=761043 QKA38_RS09330 WP_003091430.1 1986716..1987045(+) (comEA/comE1) [Pseudomonas aeruginosa strain 2021CK-01494]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=761043 QKA38_RS09330 WP_003091430.1 1986716..1987045(+) (comEA/comE1) [Pseudomonas aeruginosa strain 2021CK-01494]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385